KEGG   Pseudoxanthomonas spadix: DSC_15030Help
Entry
DSC_15030         CDS       T01643                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psd  Pseudoxanthomonas spadix
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psd00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    DSC_15030
Enzymes [BR:psd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DSC_15030
DNA repair and recombination proteins [BR:psd03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     DSC_15030
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
complement(3070536..3073028)
Genome map
AA seq 830 aa AA seqDB search
MSLHEYERKRRFDQTPEPRGGQAGRDARRPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRPGEKRLAVEVEDHPLDYASFEGDIPQGHYGAGHVQVFDHGHWTCEGDPLEAIAA
GKLDFILFGEKLGGAWKLVRTNLRGKQRQWLLIKRDDEFAADQEADDLVAAPAASAAATA
RSKPARSRATTSEQAAPGTPARAPAMPRKRGNSEAAWKRRALELDGARDTPYPPGYPPQL
CKLRALAPAGDDWLHEIKWDGYRLLADLVQGEVRLRSRNGLDWNAMFPEVVAAVRALPVR
DARLDGELVVVDAQGRSDFSALQRTIDGTAKAQLRYLVFDLPGVAGVDISRAPLRQRKAL
LKTLLGDGPGLIAFSDHVLGHGPEVFATSARAGLEGIVSKRVDSAYAGGRSEAWVKVKHE
QTDEFVVVGYTAPKGTRSGFGSLLMARVDKGVLVYAGRVGTGYDDAMLKSLLARLQPLHS
DRAPVELPAHVPFKPRSVHWVKPQLVAEVAFRGWGKEGLLRQAAFKRLREDKDMAALQAD
AGDGAGTVTITHPERVVYPGDGITKGQVADYYRRVAPLLLPELAGRPLSLLRCPNGAGGE
CFFQKHYAPSLGKAVHAVPLKQKSGTEDYLYVEDIDGVLALVQMNTLELHPWGSTVAAPE
KPDRLVFDLDPGPGVSWPQVKDAARQVRANLRKTGLESFVRLSGGKGLHVVVPIDPGPSW
DTVKEFCEAFANAMAQQQPERYIATMSKAKREQKIFIDWLRNGRGSTSVCSWSLRAREHA
TVAMPLRWEELGKVDSPDQFTLDKALQRAARLKGDPWKDIATLSQALPHA
NT seq 2493 nt NT seq  +upstreamnt  +downstreamnt
gtgtcgctgcacgaatacgagcgcaagcgccgcttcgaccagacccccgagccgcgcggc
ggacaggccggccgtgacgctcgtcgcccgatcttcgtggtgcagttgcaccacgcctcc
tcgcgccattacgacttccgcctggaagccgatggcgtgctcaagagctgggccgtgccc
aagggcccgtccttgcgccctggcgaaaaacgcctggcggtggaagtggaagaccacccg
ctggactacgccagttttgaaggcgacatcccgcagggccactacggcgccggtcacgtg
caggtgttcgaccacggccactggacctgcgaaggcgacccgctggaagccatcgccgcc
ggcaagctggatttcatcctgttcggcgagaagctcggcggtgcctggaagctggtgcgc
accaacctgcgcggcaagcagcgccagtggctgctgatcaagcgtgacgacgaattcgcc
gccgaccaggaagcagacgatctggtcgctgcgccggccgcttcggccgccgccacggcg
cgttcgaagcctgcgcgcagcagggccacgaccagcgaacaggccgcacccgggacgcca
gccagggcgccggccatgccgcgcaagcgtggcaacagcgaggcagcctggaagcgccgc
gcgctggaactggacggggcccgcgacacgccgtatccgcccggctacccgccgcagctg
tgcaagctgcgcgcgctcgcgccggccggcgatgactggctgcacgagatcaagtgggac
ggctatcggctgctggccgacctggtccaaggcgaggtcaggctgcgctcgcgcaacggc
ctggactggaacgccatgttcccggaagtggtcgccgcggtgcgcgcgctgccggtgcgc
gatgcgcgcctggatggtgagctggtggtggtcgatgctcagggccgcagtgatttctcg
gcgctgcagcggaccatcgacggcaccgccaaggcgcagctgcgctacctggtgttcgac
ctgccgggcgtggccggggtggatatcagccgcgcgccgctgcggcaacgcaaggcgctg
ctcaagacgctgctgggcgatgggcccggcctgatcgccttcagcgaccacgtgctgggc
catggcccggaggtctttgccaccagcgccagggccgggctggagggcatcgtcagcaag
cgtgtggattcggcctatgccggcgggcgttcggaggcctgggtcaaggtcaagcacgag
cagaccgatgaattcgtggtggtcggctacaccgcacccaagggcacgcgcagcggcttt
ggatcgctgctgatggcgcgcgtggacaagggggtgctggtgtacgccgggcgggtgggc
accggctacgacgatgccatgctcaagtcgctgctggcgcggctgcaaccgctgcacagc
gaccgcgccccggtggagctgcccgcgcatgtgccgttcaagccgcgcagcgtgcattgg
gtcaagccgcagctggtggccgaagtggccttccgcggctggggcaaggagggcctgctg
cgccaggccgcattcaagcgcttgcgtgaggacaaggacatggctgcactccaggccgat
gccggcgatggcgccggcacggtgaccatcacccatcccgagcgggtggtgtaccccggg
gacgggatcaccaagggccaggtggccgactactaccgccgtgtcgcgccgctgctgctg
ccggagctggccggtcggccgctgtcgctgctgcgctgcccgaacggcgccggtggtgaa
tgcttcttccagaagcactacgcgccgtcgctgggcaaggccgtgcacgcggtgccgctg
aagcaaaaaagtggcaccgaggactacctgtacgtcgaggacatcgacggggtgctggcg
ctggtgcagatgaataccctggagctgcacccgtggggttcgaccgtggctgcgccggaa
aagccggaccggctggtgttcgacctggatccaggcccgggcgtgtcctggccgcaggtc
aaggatgccgcgcggcaggtccgcgccaacctgcgcaagaccgggctggagagctttgtg
cgcctgtccggcggcaagggcctgcacgtggtggtgccgatcgacccgggccccagctgg
gacacggtcaaggagttctgcgaggccttcgccaatgctatggcccagcagcagcccgag
cgctatatcgccacgatgagcaaggccaagcgcgagcagaagatcttcatcgactggctg
cgcaacggccgcggcagcaccagcgtgtgcagctggtcgctgcgtgcacgcgaacacgcc
accgtggccatgccgctgcgctgggaagagctgggcaaggtcgactcacccgaccagttc
accctggacaaggccctgcagcgcgccgcgcgcctcaagggcgacccgtggaaggacatc
gccacgctcagccaggcgctgccgcacgcctga

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