Pseudoxanthomonas spadix: DSC_15030
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Entry
DSC_15030 CDS
T01643
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psd
Pseudoxanthomonas spadix
Pathway
psd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DSC_15030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psd03400
]
DSC_15030
Enzymes [BR:
psd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DSC_15030
DNA repair and recombination proteins [BR:
psd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DSC_15030
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AER57650
UniProt:
G7UVI9
LinkDB
All DBs
Position
complement(3070536..3073028)
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AA seq
830 aa
AA seq
DB search
MSLHEYERKRRFDQTPEPRGGQAGRDARRPIFVVQLHHASSRHYDFRLEADGVLKSWAVP
KGPSLRPGEKRLAVEVEDHPLDYASFEGDIPQGHYGAGHVQVFDHGHWTCEGDPLEAIAA
GKLDFILFGEKLGGAWKLVRTNLRGKQRQWLLIKRDDEFAADQEADDLVAAPAASAAATA
RSKPARSRATTSEQAAPGTPARAPAMPRKRGNSEAAWKRRALELDGARDTPYPPGYPPQL
CKLRALAPAGDDWLHEIKWDGYRLLADLVQGEVRLRSRNGLDWNAMFPEVVAAVRALPVR
DARLDGELVVVDAQGRSDFSALQRTIDGTAKAQLRYLVFDLPGVAGVDISRAPLRQRKAL
LKTLLGDGPGLIAFSDHVLGHGPEVFATSARAGLEGIVSKRVDSAYAGGRSEAWVKVKHE
QTDEFVVVGYTAPKGTRSGFGSLLMARVDKGVLVYAGRVGTGYDDAMLKSLLARLQPLHS
DRAPVELPAHVPFKPRSVHWVKPQLVAEVAFRGWGKEGLLRQAAFKRLREDKDMAALQAD
AGDGAGTVTITHPERVVYPGDGITKGQVADYYRRVAPLLLPELAGRPLSLLRCPNGAGGE
CFFQKHYAPSLGKAVHAVPLKQKSGTEDYLYVEDIDGVLALVQMNTLELHPWGSTVAAPE
KPDRLVFDLDPGPGVSWPQVKDAARQVRANLRKTGLESFVRLSGGKGLHVVVPIDPGPSW
DTVKEFCEAFANAMAQQQPERYIATMSKAKREQKIFIDWLRNGRGSTSVCSWSLRAREHA
TVAMPLRWEELGKVDSPDQFTLDKALQRAARLKGDPWKDIATLSQALPHA
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgctgcacgaatacgagcgcaagcgccgcttcgaccagacccccgagccgcgcggc
ggacaggccggccgtgacgctcgtcgcccgatcttcgtggtgcagttgcaccacgcctcc
tcgcgccattacgacttccgcctggaagccgatggcgtgctcaagagctgggccgtgccc
aagggcccgtccttgcgccctggcgaaaaacgcctggcggtggaagtggaagaccacccg
ctggactacgccagttttgaaggcgacatcccgcagggccactacggcgccggtcacgtg
caggtgttcgaccacggccactggacctgcgaaggcgacccgctggaagccatcgccgcc
ggcaagctggatttcatcctgttcggcgagaagctcggcggtgcctggaagctggtgcgc
accaacctgcgcggcaagcagcgccagtggctgctgatcaagcgtgacgacgaattcgcc
gccgaccaggaagcagacgatctggtcgctgcgccggccgcttcggccgccgccacggcg
cgttcgaagcctgcgcgcagcagggccacgaccagcgaacaggccgcacccgggacgcca
gccagggcgccggccatgccgcgcaagcgtggcaacagcgaggcagcctggaagcgccgc
gcgctggaactggacggggcccgcgacacgccgtatccgcccggctacccgccgcagctg
tgcaagctgcgcgcgctcgcgccggccggcgatgactggctgcacgagatcaagtgggac
ggctatcggctgctggccgacctggtccaaggcgaggtcaggctgcgctcgcgcaacggc
ctggactggaacgccatgttcccggaagtggtcgccgcggtgcgcgcgctgccggtgcgc
gatgcgcgcctggatggtgagctggtggtggtcgatgctcagggccgcagtgatttctcg
gcgctgcagcggaccatcgacggcaccgccaaggcgcagctgcgctacctggtgttcgac
ctgccgggcgtggccggggtggatatcagccgcgcgccgctgcggcaacgcaaggcgctg
ctcaagacgctgctgggcgatgggcccggcctgatcgccttcagcgaccacgtgctgggc
catggcccggaggtctttgccaccagcgccagggccgggctggagggcatcgtcagcaag
cgtgtggattcggcctatgccggcgggcgttcggaggcctgggtcaaggtcaagcacgag
cagaccgatgaattcgtggtggtcggctacaccgcacccaagggcacgcgcagcggcttt
ggatcgctgctgatggcgcgcgtggacaagggggtgctggtgtacgccgggcgggtgggc
accggctacgacgatgccatgctcaagtcgctgctggcgcggctgcaaccgctgcacagc
gaccgcgccccggtggagctgcccgcgcatgtgccgttcaagccgcgcagcgtgcattgg
gtcaagccgcagctggtggccgaagtggccttccgcggctggggcaaggagggcctgctg
cgccaggccgcattcaagcgcttgcgtgaggacaaggacatggctgcactccaggccgat
gccggcgatggcgccggcacggtgaccatcacccatcccgagcgggtggtgtaccccggg
gacgggatcaccaagggccaggtggccgactactaccgccgtgtcgcgccgctgctgctg
ccggagctggccggtcggccgctgtcgctgctgcgctgcccgaacggcgccggtggtgaa
tgcttcttccagaagcactacgcgccgtcgctgggcaaggccgtgcacgcggtgccgctg
aagcaaaaaagtggcaccgaggactacctgtacgtcgaggacatcgacggggtgctggcg
ctggtgcagatgaataccctggagctgcacccgtggggttcgaccgtggctgcgccggaa
aagccggaccggctggtgttcgacctggatccaggcccgggcgtgtcctggccgcaggtc
aaggatgccgcgcggcaggtccgcgccaacctgcgcaagaccgggctggagagctttgtg
cgcctgtccggcggcaagggcctgcacgtggtggtgccgatcgacccgggccccagctgg
gacacggtcaaggagttctgcgaggccttcgccaatgctatggcccagcagcagcccgag
cgctatatcgccacgatgagcaaggccaagcgcgagcagaagatcttcatcgactggctg
cgcaacggccgcggcagcaccagcgtgtgcagctggtcgctgcgtgcacgcgaacacgcc
accgtggccatgccgctgcgctgggaagagctgggcaaggtcgactcacccgaccagttc
accctggacaaggccctgcagcgcgccgcgcgcctcaagggcgacccgtggaaggacatc
gccacgctcagccaggcgctgccgcacgcctga
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