Pseudogulbenkiania sp. NH8B: NH8B_0086
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Entry
NH8B_0086 CDS
T01619
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pse
Pseudogulbenkiania sp. NH8B
Pathway
pse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NH8B_0086 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pse03019
]
NH8B_0086 (rhlE)
Enzymes [BR:
pse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NH8B_0086 (rhlE)
Messenger RNA biogenesis [BR:
pse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NH8B_0086 (rhlE)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
BAK74935
UniProt:
G2IUH8
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All DBs
Position
97619..99301
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AA seq
560 aa
AA seq
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MSEIKFTDLGLSEPLLRAVAETGYTTPTPIQAQAIPQVIKGGDLLAAAQTGTGKTAGFTL
PLLHRLGPAPTHLKGRPRALVLTPTRELAAQVEESVRTYGKYLPHKSMVMFGGVGINPQI
AALRKPLDILVATPGRLLDHAGQKTVDLSGVEILVLDEADRMLDMGFIHDIKKVLALLPA
KRQNLLFSATFSDEIKALADRLLNNPQLVEVARRNTANELVEQKVHLVDRDKKTELLTHL
ISQGDWHQVLVFTRTKHGANRLAEKLDKSGITAAAIHGNKSQNARTKALADFKANTLQVL
VATDIAARGLDIDQLPHVVNFELPNVPEDYVHRIGRTGRAGNEGEAVSLVCVDEFKFLKD
IEKLIKKDIPQFTVPGYEADLTVTPEPILMGGQRRGQGQGQGQRQGQGARQGQGAARQGQ
SQPRQGQGQGQGQRRGGDGQAGNARSSAGASANGGQNGRRHEHADGARQPGARPPKSNTG
SQQPKGRHTAPANGQRGEPNGNVMPPPPKEVNGNVMPPRGKPNNGNQRPGSSRPGEARRS
KPAGGRQTAALFAPKRDSNR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaaatcaaatttaccgacctcggcctgtccgagcccctgttgcgtgccgtggcc
gaaaccggctacaccacgcccaccccgatccaggcgcaggctattccgcaggtgatcaag
ggcggcgacctcttggccgcagcccagaccggcaccggcaagaccgcaggcttcaccctg
ccgctgctgcaccgcctcggcccggcgccgacccacctcaagggccgcccgcgcgctctg
gtgctgacgccgacgcgcgaactggcggcgcaggtggaagaatcggtgcgcacctacggc
aagtacctgccgcacaagtcgatggtgatgttcgggggtgtcggcatcaatccgcagatc
gccgcgctcaggaagccgctggacatcctggtggccacgccgggccgtctgctcgaccac
gccggtcagaagaccgtcgatctgtccggggtcgagatcctggtgctggacgaagccgac
cgcatgctcgacatggggttcatccacgacatcaagaaggtgctggcgctgctgccggcc
aagcgtcagaacctgctgttctcggcgaccttctccgacgagatcaaggcgctcgccgac
cgcctgctgaacaacccgcagctggtcgaagtggcgcgccgcaacaccgccaacgagctg
gtcgagcagaaggtgcacctggtcgaccgcgacaagaagaccgagctgctgacccacctg
atcagccagggcgactggcaccaggtgctggtgttcacccgcaccaagcacggcgccaac
cgcctggccgagaagctcgacaagagcggcatcaccgccgcggcgattcacggcaacaag
agccagaacgcccgcaccaaggcgctggccgacttcaaggccaacacgctgcaagtgctg
gtggccaccgacatcgccgcgcgcgggctggacatcgaccagctgccgcacgtggtcaac
ttcgagctgcccaatgtgccggaagactacgtgcaccgcatcggccgcaccggccgcgcc
ggtaacgagggcgaggcggtgtcgctggtgtgcgtggacgagttcaagttcctcaaggac
atcgagaagctgatcaagaaagacatcccgcagttcaccgttcccggctacgaggccgat
ctgacggtgacgccggagccgatcctgatgggtggccagcgtcgtggccaaggccaaggt
caggggcagcgtcagggccagggagcgcgtcaaggccagggagccgcgcgtcagggccag
tcccagccgcgtcagggtcaaggccagggccaaggtcagcgccgtggcggcgacggccag
gccggcaacgcacgtagtagcgccggcgccagcgccaacggcggccagaatgggcgtcgc
cacgagcatgccgacggcgcgcgccagccgggtgcccgtccgcccaagagcaacaccggt
tcccagcagcccaaggggcgccataccgcgccggccaacggccagcgtggcgagcccaac
ggcaacgtgatgccgccgccgccgaaagaggtgaacggcaacgtaatgccgccgcgcggc
aagcccaacaacggcaaccagcgtccgggcagcagccgcccgggcgaggcgcgccgcagc
aagccggcgggcggtcgccagaccgccgcgctgttcgcgcccaagcgcgacagcaaccgc
tga
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