Stutzerimonas frequens: DM292_08665
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Entry
DM292_08665 CDS
T05921
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psed
Stutzerimonas frequens
Pathway
psed03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psed00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DM292_08665 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psed03400
]
DM292_08665 (ligD)
Enzymes [BR:
psed01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DM292_08665 (ligD)
DNA repair and recombination proteins [BR:
psed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DM292_08665 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Tudor_3
Motif
Other DBs
NCBI-ProteinID:
AWT10264
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All DBs
Position
1891296..1893863
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AA seq
855 aa
AA seq
DB search
MALDDYQRMRDFAATPEPAGKARPKSRKSHTLQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPSVRRLAVHVEDHPLEYATFEGHIPEGHYGAGDVIVWDRGVWKPQGDPQEGY
RKGKLKFSLEGEKLAGSWNLVRTRMDGKKEQWFLIKSRDEAAREEGDYDIVAAEPDSVLS
DRTLVPRKRGAAKARIAESPAKPVKAPAKKRRTGQQKAAVTLEGAVPAELPESFKPQLAT
LVDSVPAGDWRYEIKFDGYRMLARIDSGEVRLFTRNGHDWTAKMPQQAAALAGLGLESGW
LDGEVVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDMPYLNGMDLRQVPLEQRRSALHE
VLQGSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRVGSSYTSRRSSSWVKIKCSNR
QEFIIVGYTQPKGTRTGFGALLLGLHDDKGELRYAGKVGTGFNHATLQSLHKKLRKLESD
ESPLAKAPPAADARGAQWLEPKLMCEVAFAEMTRQGVVRHSVFHGLRSDKPAKAITHERP
KAAAKPGAAGTRGRTDPIARGRINISNPDRVIDPSSGTTKIELARFYAQIAPWALPQLKA
RPLALVRAPEGISGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDNAEALVGAAQMG
TVELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMIEATQLTQTLLDEIGLVSFLKTSGG
KGMHIIVPLDPVHEWSEAKRFSQAIAQHMAKLLPGHFSAVSGPKNRVGRIFIDYLRNSRG
ASTVAPYSVRAREDLPVSVPIHRDELADLKGANLWTVRNLLERLEQLGDDDPWAEMPRTK
QTITAQMRERLGMST
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgacgactatcaacgcatgcgcgacttcgccgccacgccggaacccgctggc
aaggcgcggccgaaatcgcgcaagagccacactctgcagtactgcatccaaaagcatgac
gcgacgcgcctgcactacgactttcgcctggaactggatggcacgctgaagagttgggcg
attcccaaagggccgagcctggatccgagcgtgcgcaggctggcagtgcacgtggaagac
catccgctggagtacgccaccttcgaggggcatatccccgaagggcattacggtgccggc
gatgtgatcgtctgggatcggggtgtgtggaaaccgcagggcgatccgcaggagggttac
cgcaagggcaagctcaagttcagtctcgagggcgaaaagctcgccggcagctggaacctg
gtccgcacgcggatggacgggaaaaaagaacagtggttcctgatcaagtcgcgtgacgag
gcggcgcgcgaggagggcgactacgacatcgtcgcagccgaacccgatagcgtgctcagc
gaccgaaccctggtgccgcgcaagcgtggcgcagccaaggcccgtatcgccgaatctccg
gccaagccggtcaaggcaccggcgaagaagcgtcgaacggggcagcagaaggcggcagtc
accctggaaggcgcggtcccagctgagctgccggagagcttcaaaccacagctggccacc
ctggtcgattcggtgcccgccggcgactggcgctacgagatcaagttcgacggctatcgc
atgctcgcgcgcatcgattccggtgaggtcaggctgttcacccgcaacggccacgactgg
acggcgaagatgccccagcaggccgcagcactggccggactgggcctggagtcgggttgg
ctggacggtgaagtggtggtgccgaacgaggagggcaccccggattttcaggcgctgcag
aacgcattcgaagccggccgcagcggcaacattctctactatctgttcgacatgccctac
ctgaacggcatggacctgcgtcaggtaccgctggagcagcgccgctcggcactgcacgag
gttctgcaaggtagcgacagcgagctgctgcgcttttccgaggacttcaccgagcagccc
gacagcattctggaaagcgcctgccagatgaagctcgaaggcctgatcggcaagcgcgtc
ggcagcagctacacctcccggcgcagcagcagctgggtgaagatcaaatgcagcaaccgg
caggaattcatcatcgtcggctacacccagcccaagggcacccgcaccggtttcggcgcg
ctgctgctcggtctgcacgatgacaagggcgagctgcgttacgccggtaaggtcggcacc
ggcttcaaccatgcaaccctgcagagtctgcacaaaaagctgcggaagctggaaagcgat
gaaagcccgctagccaaggcgccgccggccgccgatgcccgtggcgcgcagtggctggag
ccgaagctgatgtgcgaggtggcgttcgccgagatgacccgccagggcgtggtgcgtcat
tcggtgtttcatggcttgcgctctgacaagccggcgaaagcgattacccatgagcgaccc
aaggcggctgccaagcctggagcggccggcacgcgcggcaggactgatcccatcgcccgc
gggcgcatcaatatctccaatcccgaccgcgtcatcgaccccagtagtggaaccaccaag
atcgagctggcccgcttctacgcgcagatcgcaccttgggccctgccgcaactcaaggca
cgcccgctggctttggtgcgcgcaccggaagggatcagcggcgagctgttcttccagaaa
cacgccgacaagctggccatcccgcatatcacgcagctcgacccggcactcgacccgaag
catggcgcgctgctggtaatcgacaacgccgaagcactggtcggcgcggcgcagatgggc
accgtcgaactgcacagttggaatgccgtggcgccagacctcgagcacccggaccgtttc
gtcctcgacctcgacccggatcccgcgctgccttggaaacgcatgatcgaagcgacacag
ctgacgcagaccctgctggacgagatcggcctggtttcgtttctaaagaccagcggaggg
aagggcatgcacatcatcgtgcccctcgaccccgtacacgagtggagtgaggccaagcgc
ttcagccaggccatcgcccagcacatggccaaactgctacctgggcacttctcggcggtc
agcggaccgaagaaccgggtcggccgcatcttcatcgattacctgcgcaacagccgcggc
gccagtaccgtcgccccctattcggtgcgtgcacgcgaagacctgccggtttccgtgccc
atccatcgcgacgagctggcggacctcaagggcgccaacctctggaccgtgcgcaatctg
ctggaacgcctggagcaactgggcgacgacgatccctgggcagagatgccgcggaccaaa
cagaccatcaccgcgcaaatgcgcgagcgtctcggcatgtcgacttaa
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