Pseudonocardia sp. EC080610-09: AD006_19015
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Entry
AD006_19015 CDS
T04146
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pseq
Pseudonocardia sp. EC080610-09
Pathway
pseq03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pseq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AD006_19015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pseq03400
]
AD006_19015
Enzymes [BR:
pseq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AD006_19015
DNA repair and recombination proteins [BR:
pseq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AD006_19015
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ALL78890
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All DBs
Position
complement(4121578..4122468)
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AA seq
296 aa
AA seq
DB search
MTNPDKVLYPATGTTKAEVLGHYLAVAEAMLPHLESRPATLKRWPDGVESSSFFEKNVSR
HAPSWLRTARVGTPGGRSESADFAVITDAEGLAWAANLAALELHVPQWRLGPRDGRHPPD
RVVFDLDPGEGTTVVDCCRIALRLRALLDEHGLPVYPSTSGGKGMQLYLPVRVTEPERTS
EFAREVAERLAAEHPRETIAVMTRARRRGKVFVDWSQNNTAKTTIASYSLRGRERPTVAT
PVTWDEVDACREAGDLVFTCDDLPGRLDTHGDLMRPLLDTEGFRLPRGGAIFEVPG
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
ctgaccaacccggacaaggtgctgtacccggccaccggcacgacgaaggccgaggtcctc
gggcactacctcgccgtcgccgaggcgatgctgccgcacctggagagccgccccgccacg
ctgaagcgctggccggacggggtggagtcgtcgtcgttcttcgagaagaacgtgtcccgg
cacgcgccgtcgtggctgcgcacggcacgggtcggcacgcccggcggccggtccgagtcg
gccgacttcgcggtgatcaccgacgccgaggggctggcctgggcggcgaacctcgcggcg
ctggagctgcacgtcccgcagtggcggctcggcccgcgcgacggcaggcacccaccggac
cgtgtcgtgttcgacctcgatcccggtgaggggacgaccgtcgtcgactgctgccggatc
gcactgcggctgcgcgcgctgctcgacgagcacgggctgccggtgtacccgtcgacgtcc
ggcggcaagggcatgcagctctacctgccggtgcgggtcacagagcccgagcgcacctcc
gagttcgcccgggaggtcgccgagcggctcgccgccgagcacccgcgggagacgatcgcg
gtgatgacccgcgcccgtcgccggggaaaggtgttcgtcgactggagccagaacaacacg
gccaagacgacgatcgcctcgtactcgctgcgcgggcgcgagcggccgaccgtggccacc
cccgtcacctgggacgaggtggacgcctgccgcgaggccggggacctggtgttcacctgc
gacgacctgcccggccggctggacacccacggtgacctgatgcgtcccctgctggacacc
gagggtttccggctcccccgtggtggggcgatcttcgaggtgccaggctga
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