Pseudomonas sp. StFLB209: PSCI_3759
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Entry
PSCI_3759 CDS
T03623
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pses
Pseudomonas sp. StFLB209
Pathway
pses03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pses00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSCI_3759 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pses03400
]
PSCI_3759 (ligD)
Enzymes [BR:
pses01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSCI_3759 (ligD)
DNA repair and recombination proteins [BR:
pses03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSCI_3759 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DUF5703
Motif
Other DBs
NCBI-ProteinID:
BAP44461
UniProt:
A0A077LK70
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Position
4211147..4213645
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AA seq
832 aa
AA seq
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MVSEYTRKRRFDITREPPETGTRSKRKAAGEALSFAIQKHDASHLHYDLRLELDGTLKSW
AVPKGPSLDPAHKRLAVQVEDHPLAYASFEGRIPEGQYGAGEVIVWDRGIWQPHGDPRKG
YEAGKLEFTLIGEKLNGEWALVRTRLKGSGNRKQWLLIKRSDDAARPVDEFDITVERPDS
VLSDATLSRTRPARPEQPKKNTAFVHTLSPQLATLIDRPPPGDWLYEIKYDGYRILTCIH
AGEVRLLSRTGNDWTARMQRLAKALARLGLEDSWLDGEVVVLDRDGLPDFQALQRAFDEH
SDAQIVYYLFDAPWLNGDDLRKQPLQARREALAQVLEGQRSKLIRFSAGFAASHHDIVES
ARAMGLEGVIGKRAGSLYQGKRSADWIKLKCRLAQEFVIVGYTPPEGSRSGFGALLLAVN
DARAAGLVYAGRVGSGFDGKTLRQLKQQLDALQRDSSPLCKPLSRELSRDVHWVEPQLVA
EVQFAEWTRDALLRQASFIGLRTDKPAAQVLREVARRAALPLVDEAQPDSSEQATKACVA
GVAISHPERVIDPQSGVSKAVLAQFYLAIADRLLAELSKRPVALLRCPQGIEGEQFFQKH
AQRLSIPNITQLDASLDPGHAPLLQIDNRAALAGVVQMGGVELHTWGATSDRIETPDRLI
FDLDPDPALPWCSMIEATQMLLAVLDELGLQAFLKTSGGKGMHLIVPLARHTGWDQVKRF
GKAVAEFMSRQLPERFSATAGPQNRVGRIFIDYLRNTRGGTTVSAWSVRARPGLPVSVPV
GRDELATLSSARQWHVGNLAEHLRDLDEDPWAGYHNRQRITQAMWRQLGIDD
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggtcagcgagtacacccgcaagcgccgtttcgatatcacccgcgaaccgccagagacc
ggcacccgcagcaagcgcaaggccgctggagaggcgcttagctttgcgatccagaagcac
gacgccagtcacttgcactacgacttgcgtcttgaactggacggtactctgaaaagctgg
gcggtacccaaaggcccgagcctggacccggcacacaagcgcctggcagtgcaggtcgaa
gaccacccgctggcgtacgccagctttgaagggcgtattcccgaagggcagtatggtgcc
ggtgaggtcattgtctgggatcgcggtatctggcagccgcacggtgatccgcgcaagggg
tatgaagctggcaagctggaattcaccctgatcggggaaaaactcaatggcgagtgggcg
ttagtgcgcacccggctcaagggcagcgggaatcgcaagcaatggctgctgatcaagcgc
agcgacgatgcggcgcggccggtcgatgaatttgatatcaccgtcgagcgccccgacagt
gtcttgagtgacgccaccctcagccgaacccggccggccaggcctgagcagccgaaaaaa
aacacagcctttgtacacacgttgagcccgcaactggccaccctgatcgaccgaccgccg
cccggcgactggctgtatgagatcaagtacgacggctatcgcatcctgacctgcatccac
gccggtgaagtgcgcctgctgagtcgtaccggcaatgactggacagcacggatgcaaagg
cttgccaaggcgctggccaggctggggcttgaagacagctggctcgacggcgaggtggtg
gttctcgatcgtgacggcttgccggattttcaggcgttgcaacgggcatttgatgagcac
agcgatgcacagatcgtttactacctgtttgatgcgccctggctcaatggcgatgacctg
cgcaagcagccgctgcaagcgcggcgtgaggctctggcccaagtgcttgaaggtcagcgc
agcaaattgatcagattctccgcaggctttgccgccagtcatcacgacattgtcgagagt
gcaagggccatgggcctggaaggggtcattggcaaacgtgctggcagtctctaccagggc
aagcgcagtgctgactggatcaagctcaaatgccgtctggctcaggagtttgtgatcgtc
ggctacacaccgcccgagggtagccgtagtggtttcggcgcgttgttgctggcggtcaat
gatgccagggcggcaggattggtgtacgccgggcgggtcggcagcggctttgacggcaag
acgctgcgccagctcaagcaacagcttgatgcattgcagcgtgacagctcgccgttatgc
aagccgctcagtcgtgagttgagccgcgatgtgcactgggttgaaccgcagctggtcgcc
gaggtgcagtttgccgaatggacccgagatgcgcttttgcgtcaggcctcgttcatcggc
ttgcgtaccgataagccggcggcgcaggtgctgcgtgaggtcgcccgccgagcagctctg
ccgttggtggatgaggcgcagccggactcctcagagcaggccactaaagcctgcgtcgcc
ggcgtcgcgatcagtcaccctgaacgggtcattgatccgcaaagcggcgtcagcaaggcc
gttctggcgcagttctatctggccattgccgaccggctgctggctgagctgagcaaacgt
ccggtcgcgttgctgcgttgcccgcaaggcatcgagggcgagcaatttttccagaaacat
gcccagcgcttgagcatcccgaatatcactcaacttgacgcgtctctggaccccggtcat
gcgccgctgctgcagatcgataaccgggcagcgctggccggtgtggtgcagatgggggga
gtcgagttgcatacctggggcgctaccagtgaccggattgaaactccggaccggctgatc
ttcgatctcgatcccgatccggcgctgccgtggtgcagcatgatcgaggccacccagatg
ctcctggcggtgctcgatgagctgggcctgcaggcctttctgaaaaccagcggcggcaag
ggcatgcacctcattgtgccgctggcccggcacaccggttgggatcaggtgaagcgcttt
ggcaaggcggtcgccgaattcatgagtcgccagttgcccgaacgcttcagcgctacggcc
ggcccacagaaccgggtcgggcggatctttattgactatctgcgcaatacccgcggcggc
actacggtgtcggcctggtcagtgcgcgcccgacctggcctgcccgtgtcagtgcctgtc
ggtcgcgatgaactggcgaccctgagctcggcccggcaatggcacgtcggcaacctggcg
gagcacttgcgcgatctggacgaagatccatgggcgggctatcacaatcgccagcgcatt
actcaggcgatgtggcgacagttgggtattgatgattga
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