Polypterus senegalus (gray bichir): 120518428
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Entry
120518428 CDS
T08668
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex03013
Nucleocytoplasmic transport
psex03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120518428 (pnn)
03015 mRNA surveillance pathway
120518428 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psex03019
]
120518428 (pnn)
03041 Spliceosome [BR:
psex03041
]
120518428 (pnn)
Messenger RNA biogenesis [BR:
psex03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120518428 (pnn)
Spliceosome [BR:
psex03041
]
Complex C
Other components
EJC/TREX
120518428 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
120518428
NCBI-ProteinID:
XP_039597144
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All DBs
Position
18:complement(85284741..85314917)
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AA seq
684 aa
AA seq
DB search
MAVAVRTLQEQLEKAKESLKNVDENIRKLTGRDPNELRPGQTRRLTIPGPGGGRGRGINL
LRRGLSDGGVGPPAKQRDIEGALLRLAGDRRARRESRHESDAEDEEDVKKPALQSSVVAT
SKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEV
QAEEERKKVENEKRELFEERRAKQTELRLLEQKVELAQLQEEWNMHNMKIIKYIRTKTKP
PVFYIPGRMCSATHKLLEDSQKKMNGILQSRREEFAEQLNKMEARPRRHSLKEKEQEELK
NEDRQNEEQEEGKRAQQEAEMEETGNQHNDIEMEEPGDEREVSLVHSDVEPEQKSSIVKQ
TEEQQHEQPMEVRDEEEDEEEEEEGICGAVKEQQERQPDSCLDAQEYVLPAQVENDQEMV
ERKDDTPGVAETEVVQEKKKEEVNFVSETDQESEFKIENEKENGLEAETMIEYEPMLDSE
AALEMIVPESHSPREEIEFSLTVQDDRRPQPHLPQQMEEPVKTLTSSSKSSNRARGHLKE
KRKSRSSSSSSSSSTSTSSSSGSSSSSSSSESSSQSSSSSSSSSSRSSSSSSSSSESRSR
ERGHNKKRRRRSAERDRERERKKGNPGVDRNHKSSKGSSRDIKGSKDKNSRADRKRSVSE
GSRSGKRPSRNERERKSDRKDKRR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgcgaactttgcaagaacagctcgaaaaagcaaaagaaagcttaaaa
aatgtagacgagaacattcgcaaattaacgggtcgtgaccccaacgagctcaggcctggc
caaacgagaagactgaccatcccaggccccggtggaggtagggggcgtggcatcaattta
ctaaggcgtggactctcggacggaggagtaggacccccagctaagcagagagatattgaa
ggggctttattaaggctggcaggtgatcgacgagcaagaagagagtcacgccatgaaagc
gacgctgaagatgaagaggatgttaaaaagccagcgttgcagtcgtcagttgttgctacc
tccaaagagcgaacacgtcgagaccttatccaggaccaaaccatggatgaaaagggcaag
caaaggaatcgacgcatgtttggcctgttgatgggtacgctacagaagtttaaacaagag
tccactgttgctacagaaaggcaaaaaagaaggcaggagattgagcaaaagcttgaggtc
caggcagaagaagaacgtaaaaaagttgaaaatgaaaaaagagagctatttgaagaacgc
cgtgccaaacaaaccgagctgaggcttttggaacaaaaagttgaacttgctcagttgcaa
gaagagtggaacatgcacaacatgaaaattataaaatatataagaacaaagacaaaaccg
cctgtattctatattcctggccgaatgtgttcagccactcataagctgcttgaggattca
cagaaaaagatgaatggtatcttacaatcaaggcgtgaagagtttgctgagcagcttaat
aaaatggaagctcggcctaggcgtcactccctgaaggagaaagagcaggaggagttgaaa
aatgaagatcggcagaatgaagaacaggaggagggtaagcgggctcagcaagaagccgag
atggaagagacaggtaatcagcacaatgatattgagatggaggaaccaggagatgagaga
gaggttagtttagttcatagtgatgtagaaccagaacagaaaagcagcattgtaaaacaa
acagaagagcagcaacacgaacagcctatggaagttagagatgaggaagaggatgaggaa
gaggaggaggagggtatttgtggtgctgtgaaagaacagcaggagaggcagccagatagt
tgtttagatgctcaagagtatgtattgcctgcacaggtagaaaatgatcaggaaatggta
gagaggaaagatgacaccccaggagtagcagaaacagaggtagtacaggagaagaaaaag
gaagaagtgaattttgtatctgagacagatcaggagagtgagtttaaaatagaaaatgaa
aaggaaaatggtcttgaagctgaaactatgatagaatatgagccaatgcttgattctgaa
gctgccctagaaatgattgtacctgaaagtcattctcctagagaagagatagagtttagc
ttaaccgtgcaagatgatcggcgtccacagccacatttgccacagcaaatggaagagcct
gttaagactctcacatcaagcagcaagtctagtaaccgagctagagggcatttaaaggag
aaaagaaaaagtaggagcagcagcagctcctcctctagtagtacctccacttctagtagt
agtggtagcagctctagtagtagcagtagtgaaagcagtagccagagcagttctagcagt
agtagcagcagtagtcgcagtagttctagtagtagctcaagcagtgagagtcgtagtcgt
gagcggggtcacaataagaagcgtagaaggcgcagtgcagaaagggacagagagcgagaa
aggaagaaaggaaacccaggagttgacaggaatcacaagtcatccaagggaagcagtcgg
gacataaaagggtccaaggacaagaactccagagcagacaggaagaggtcagtttcagaa
ggcagtcgttcggggaaaagaccttcacgcaacgaaagagaacgcaaatcagacagaaag
gacaaaaggcgataa
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