Polypterus senegalus (gray bichir): 120525611
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Entry
120525611 CDS
T08668
Symbol
col12a1b
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
psex00535
]
120525611 (col12a1b)
Proteoglycans [BR:
psex00535
]
Extracellular matrix (ECM) proteoglycans
Others
120525611 (col12a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Pur_ac_phosph_N
Collagen
Copine
SPRY
Motif
Other DBs
NCBI-GeneID:
120525611
NCBI-ProteinID:
XP_039603966
LinkDB
All DBs
Position
3:complement(148148174..148319552)
Genome browser
AA seq
3194 aa
AA seq
DB search
MKIRLSLAAVAVLTALLFTSAEAQVDPPSDLKFTILNENTVQMAWKSPLSRIDGYKLTVV
PTTDGPSKEIDLPASATQTLITDLIPDVEYVVTIHSFEGSEESLPIFGQLTIEASNASPG
GPPRRRPEHEATFKCSQSTIADIVFLVDGSWSVGRDNFKHIRSFIAMVTSAFDIGEEKTR
VGIVQYSTDTRTEFNLNQYFKKGELLKAINNLPYKGGNTMTGDAMDYLLKNTFTEAAGAR
KGFPKVAIIITDGKSQDPVEDNAKRLRNIGVEIFTLGIKAADIEELQMMSSSPYDKHVFS
VSNFDLIKTVQREIASQVCSGIEEQLNELVSGEEAVEPASNLQVLEISSRSMKVTWDASP
GQITGYKLQLIPMLAGSKRQELYVQPTVTSVNVRDLSPDTEYQISLFALKGLTPSEPAMA
MEKTQPIKKTVECTLGVDVQADVVLLVDGSYSIGLTNFAKVRAFLEVLVKSFEIGPNKVQ
ISLVQYSRDPYTEFALNTHQSIDAVLKAVRSFPYRGGSTNTGKAMTYVREKIFVASKGAR
RNVPRVMILITDGKSSDAFKDPATRLRNTDVEIFAVGVKDAVRSELEAIANPPADTHVYT
VEDFDAFQRISTELTQSICLRIEQELHAIISRSLVAPRDLTFSEITSRSFRASWLSDSDR
VESFLLKYKPTLGGDTITVSVPSDTTSTVLMNLQPLTKYSVSVLSQYENGESLPLEGEET
TLEEQGSPRNVRVSDETENSFRVTWGAAPGNVQRYRLSYVPIGGGETKYAATVGAETSIV
LEDLLPLTTYQVSVAAEYASGIGREMGTTGTTKEAKGSPRDLRVSDFTTSSMRLAWAAAP
GRVLQYRITYKPSAGGESKEITVKGDATTALLKNLQSDTEYDLSVSARYSTGFGEPLIGE
GKTLEERGSPRDLITKDITSTTIGASWKAAPGRVTAYRVAWKSLFDDEAGEKRIAGDLTE
TVLENLTPETKYKISVYAEYSSGEGDPLFGEDTTEASPNAKSLRVSDETETTMKVTWQPA
PREVVNYRLTYRPVSGGRQIATKVPGTMTSTVLRKLQPRTSYDITVHPIFKKGEGKARQG
IGTTLSPFKAPRNLKTSEPTKTSFRVTWDHAPGDVKGYKVTFHPAGEDINLGELLVGPYD
NTVVLEELRAGTKYTVSVFGMFDGGESMPLAGEEKTTLSDEPKGPHVTMSDIACKTTAKA
DIVLLVDGSWSIGRLNFRTIRAFIARMIGVFEIGPDKVQVGLAQYSGDPRTEWHLNTHKN
RKALLDAVSNLPYKGGNTLTGMALNYILQNNFKPNVGLRPDSRKIGVLVTDGKSQDEIIE
SSKKLRDQGIELYAIGVKNADENELRSIASDPDEIHMYNVQDFSFLLDIVDSLTENLCNS
VKGPGGAPDSPTNLRTSEVTSHSFRATWTAPSGNVDSYRVVYMTIGGRPKELSVDGSITT
AVLPDLNPETEYEVNVYAILGQESSEPLTGRETTLPLPTARNLKTYDVSTTTMKVRWDAA
SGATSYLLLYEPSGIAESVAKELMVPADVTDVNLEHLIPDTMYSITVYAKHGDATSDPVS
TQDSTLPLPPAGELRITDVTHSSMKTSWDAAPGAVRKYILRYKVAEGDDFKEVDVGGKQT
TLVLKNLASQTEYDVDVTPIYDYGPGSKMTGQAVTDVVPAPSNLRFSEVTETSFRATWDH
GAPDVSLYRIGWREVGDTELSTAMLGSEDNSYVLENLKPDTLYEVQVTAVYPDESESEDL
IGNERTLKKIILTDAPKSAPQNLQVYNATTSSLTVKWDHATGRVQKYRINYVPSAGGQEL
TTQVGGRQNSVVLQKLTPDTPYSIAVTSVYADGEGGQITGRGKTKPLGAAKNLRVTDPTI
STLNVRWDPAEGSVRQYRVRYTPTAGGDEDMVTVSGGTTFTVLKNLQSDTPYTITVVPVY
TEGEGGRLSGNGKTLPLGGPRNLRVTNPTTSTLNVRWDPADGNVRQYRVLYVPSSGGVED
EAIVSGGTTSTVLRSLQSDTAYTITVVPIYTEGEGGRLSGTGKTLVRGSPRNIQVFNPTP
NTLNVRWEPAPGQVQQYRVVYAPLRGTRPPESVVVPGGTTTTVLERLMPDTPYSVNVVAI
YPDGEGGQVNSDGKTLPRSGPRNIRVYDPTTNSLTVNWEHADGPVQQYRIAYAPTTGDPI
EEFTYVPGRTNKVILPNLQADTPYRINVVAVYADGDGGDLTGHGRTVGLLGPRNLRVSDE
WYTRFRVSWDPAPTPVLGYKLVYQSTVADETMEVFVGDVTTYTLQNLLPGTTYDLKVFAQ
YDGGLSGVLPGEGTTLYLNVTDLTTYQVGFDSFCIRWAPHRAATSYRIKLNPLDPSRLGQ
QEVTVNGAESTYCFSGLSPDALYNATVYTQTPNLEGPGVSVRERTLIKPTEAPTPPPTPP
PPPTIPPAWEICKGAKADVVFLIDGSWSIGDDNFNKVLQFVFSTIGAFDTISPEGMQISL
AQFSDDARTEFKLNTYKEKGTTLAALQLVRYRGGNTKTGVALKYVGERVFTTENGMRKNV
PKVLVVVTDGRSQDEVKKHAATLQHSGYSVFVIGVSDVDYTELRNIGSKPSERHVFVVDD
FDAFAKIQDNLITFLCETATSTCPLIYLNGYTSPGFRMLEAFNLTDKTFATVQGVSMEPG
SFNTFTAYRLHKNAYLNQPTKEVHPEGLPPAYTIIFLFRILPDTPNEAFDIWQITDKDNK
PQVGVTLDASSKTVSFYNKDTRGEMQKVTFDKEEVKRMFFGSFHKIHIVVSPKSVKIHID
CKEIMEKEIKEASNITLDGSEVLGKMVKSRGSKGESATFQLQMFDMVCSAGWTSRDKCCE
LPSTRDEAKCPALPHACTCAQDSVGPQGPPGPPGYPGNKGPRGERGENGPPGPLGPRGDI
GLPGPQGPPGPQGPNGLSIPGERGREGPKGDPGDAGLPGHPGPQGSIGAMGPVGAAGPRG
PPGKEGPSGPRGPPGQMGAPGAPGMPGPTGKPGKPGDLGSPGPAGIRGEKGERGDFASQN
MMRSIARQVCEQLMNGQLSRFNNMLNQIPNGYYSNNNNPGPPGPPGPSGPQGPRGEPGQA
GRSGFPGTPGEPGQAGERGVPGEKGERGNPGTGSQGPRGLPGPPGPSGESRTGPPGSRGP
PGPPGPPGRHGIPGVRGPQGPPGYCDSSQCVGIPYNGGQGFPGPYQPPPETHVVPLTEEE
TEDYDTEMQSPGYS
NT seq
9585 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaggctgtctttggcagcagttgctgtgcttacagctttgttgtttacctcg
gctgaggctcaagttgatcctccttcagatttgaaatttactattcttaatgaaaatacg
gtacaaatggcatggaaatcaccactaagtagaatagatggatataaattaacagtggta
ccgacaacggatggcccctctaaagaaattgatctcccagcctctgctacacaaacattg
ataacagatttaattcccgatgtagaatatgtggtcacaatacattcttttgaaggatct
gaggagagtctaccaatttttggccaacttacaattgaagcaagtaatgcatctcctggt
ggaccaccaagacgaagaccagagcatgaggcaactttcaaatgttcccaaagcactatt
gcagatattgtgtttctggtggatggctcttggagtgttggcagagacaacttcaagcat
atacgcagctttattgccatggtcacgtctgcttttgatattggcgaagaaaaaacacga
gttggcattgtacagtacagcacagacaccaggactgagttcaacttaaaccagtacttc
aagaagggagagcttctgaaagccatcaataaccttccctacaaaggaggaaacacaatg
acaggagacgccatggactatttacttaaaaacactttcacagaggctgctggagccaga
aaaggatttccgaaagtagcaataatcataactgatggaaaatcacaagatcctgttgaa
gacaatgctaagaggctgcgaaatattggggttgaaatatttaccttaggaatcaaagct
gcagatattgaagaattgcagatgatgtcctcaagtccttatgacaagcatgtcttcagt
gtatcaaactttgacttaattaagacagtacaacgtgagatagcttcccaagtgtgttcg
ggaattgaagaacagctgaatgagcttgtcagcggagaggaagctgtggagccagcatcc
aacttacaagttcttgaaatctcatccagatcaatgaaggtcacgtgggatgcatcccca
gggcagataacgggctataagctgcaacttatcccaatgcttgctggcagcaagaggcag
gaactgtatgtacaacctactgtgacatcagtgaatgtaagagatctgtctcctgacaca
gagtaccagatcagcttgtttgctttgaaagggcttacaccaagtgagcctgcaatggca
atggagaaaactcagcctatcaagaaaactgtagagtgtacacttggagtggatgtgcaa
gctgatgttgttcttttagttgatggctcctatagtattggtttgactaattttgccaaa
gttagagcttttctggaagttttagtgaaaagctttgaaattggaccaaacaaggtacag
attagtcttgtccagtatagcagggatccttacactgaatttgctttgaacacacaccag
agcatcgatgctgtacttaaggcagtccgctccttcccctacagaggaggctctaccaac
acaggaaaagcaatgacctatgtgcgagaaaaaatatttgttgccagcaaaggtgccaga
agaaatgtcccaagagtgatgattctgatcactgatggcaaatcttcagatgcttttaaa
gatcctgctacaaggcttcgaaatacagatgtggaaatctttgcggttggtgtgaaagat
gctgttcggtctgaactggaagccattgctaaccctccagctgatactcatgtatataca
gttgaagactttgatgctttccagaggatatcaacagagcttactcaatcaatttgctta
cgcattgagcaagaattacatgcaattataagcagatctttggtggcacctagagatctt
accttttctgaaatcacatctcgaagtttccgtgccagctggttatctgactctgacaga
gtagaatctttccttttaaaatataagccaacattaggtggagataccatcacagtttct
gttccaagtgacaccacctcaacagttttgatgaatctacaacccctaacgaaatactca
gtcagtgttttatctcagtatgagaatggggaaagtcttccgcttgaaggagaggaaaca
acactggaagaacaagggtctcctcgaaatgtaagagtgtccgatgaaactgaaaacagt
tttcgagtgacatggggagcggctcctgggaatgtacaacgataccgactttcatatgtt
cccattggaggaggagagacgaaatatgcagccactgttggggccgagacatcaattgtt
ttggaagatttactcccgctgactacatatcaggtttcagttgctgcagaatatgcttct
ggaattggaagagaaatggggacaactgggacaactaaagaggctaaagggtcaccaaga
gacctaagagtatctgacttcactacctctagcatgagactagcatgggctgcagctcca
gggagagtgttgcagtataggattacgtacaagcccagcgcaggaggagagagtaaggag
ataacagtaaaaggagatgctacaacagcactcttgaaaaatctgcagtctgacactgaa
tacgacttgtctgtgagtgcacgctactcaacaggatttggagagccactcattggagag
ggaaaaactttagaagaacgtggttctccaagagacttgatcactaaagacattacaagc
acaactattggagcctcctggaaagcagcacctggacgagtgactgcttacagggtagcc
tggaaatctctttttgatgatgaggctggtgaaaagcggattgctggtgatttgacagaa
acagtattggagaatctgacaccagaaaccaagtacaagatctctgtctacgcagaatac
agcagcggagaaggcgatccactctttggagaagacaccacagaagcatcaccaaacgct
aaatctttgagagtgtctgatgaaaccgagacaacgatgaaagtgacatggcagccagcg
ccacgtgaagttgttaactaccgcctcacttaccgacctgtttctggaggacgacagatt
gccaccaaagttccaggaaccatgacatctacagtgttgaggaaattacagcctagaacc
tcttacgatatcacagtacatccaattttcaagaaaggagaaggaaaagcaaggcaagga
attggaactacactttcaccatttaaggcaccaagaaacctcaaaacatctgaaccaact
aaaaccagctttagggtaacctgggaccatgcaccaggtgatgttaagggatataaagtc
acttttcaccctgctggagaggatatcaatttgggtgaactacttgttggaccttatgac
aacacagtagtgttggaagagctcagagctggaacaaagtatacagtaagcgtatttgga
atgtttgatggtggagaaagtatgcctttagctggcgaagagaaaactacactctctgat
gagccaaaaggaccacatgtaacaatgtcagatatagcttgtaagaccacagctaaagca
gatattgttcttctggttgatgggtcatggagtattggacgtctcaacttcagaaccatt
cgagcatttattgcccgtatgattggagtctttgaaattggtccggacaaagttcaagtt
ggtctggctcagtacagtggtgatccaaggactgaatggcatcttaacactcacaaaaac
agaaaagctttactggatgctgtttccaatttaccatataaaggagggaacacccttaca
ggcatggctttaaattatattcttcagaacaacttcaagccaaatgttgggcttcgccct
gattcgcgcaagattggtgttctcgttactgacggcaaatcacaagatgaaattattgag
agctctaagaaactgcgagaccagggcattgagctatatgctattggtgttaagaatgca
gatgaaaatgaactgaggtccattgcttcagatcctgatgaaattcatatgtataatgtg
caagatttctcctttttgctcgatattgttgatagccttactgaaaacctttgcaacagt
gtaaaaggcccagggggtgcacctgattctcctacaaatttaagaacttcagaggtgacg
tcacattccttcagagctacctggactgcacccagtggcaatgtggactcataccgcgtg
gtgtacatgacaatcggaggcagacctaaggagttgtctgtagatgggtcaatcacaact
gcagtcttgcctgacctaaatcctgaaactgagtatgaggtgaatgtgtacgctatatta
ggacaagaaagcagtgagccacttacaggccgagaaaccacattgcctcttccaacggcg
aggaatttgaaaacctatgatgttagtacaacgacaatgaaggtgaggtgggatgcagct
agtggagcaacaagctatttgctgctctatgaaccatctggaattgcagagtctgtggct
aaagagttgatggtcccagcagatgtgacagatgtgaatctggagcatttgatccctgat
actatgtactcaattactgtctacgcaaaacatggagatgctaccagtgatcctgttagc
actcaggattccactttgccattgccaccagctggagaattaagaatcactgatgttaca
cacagctcaatgaaaacttcctgggatgctgcaccaggcgctgtgcgtaaatacatatta
agatacaaggttgctgaaggagacgacttcaaggaggttgacgttggtggcaaacaaaca
acacttgttttaaagaatctggcttctcaaactgagtatgatgtggatgtgacaccaata
tacgattatggaccaggttcaaaaatgactggacaagctgttactgatgttgtccctgca
ccttcaaatcttagattctctgaggtaacagaaacaagttttcgagctacttgggatcat
ggagctcctgatgtgtctctttatcgaattggctggcgtgaagtaggagatacagaactc
tcaaccgctatgctaggcagtgaagacaattcctatgttctggaaaacttgaaaccagac
actctgtatgaagttcaagtgacagctgtctaccctgatgaatctgaaagtgaagatctg
attggcaatgaaagaacattgaaaaagattatcctgacagatgcaccaaagagtgcacct
caaaacttacaggtatacaatgccacaaccagcagtttgactgtgaaatgggatcatgct
actggaagagtacagaagtatcgaattaattatgtgccaagtgctggaggacaggagctt
acgactcaagtgggaggcagacagaacagtgttgtccttcagaagctcacaccagacacc
ccttacagcattgcagtaacatctgtctatgcagatggtgagggaggacagattactggc
agagggaagacaaaaccacttggagcagcaaagaatctccgtgttactgatcccactatc
agtaccctcaatgtgcggtgggacccagctgaaggcagtgtgcgccaatacagagtccgg
tatactcccactgctggtggggatgaggacatggtaacagtatccggaggtacaaccttt
acagttttaaaaaatttgcagtcagatacaccctataccatcactgtggttcctgtttac
actgaaggagaaggtggtcgactgtctggaaatggaaagacattgccactcggaggacca
agaaatctgcgtgttaccaatcccactaccagcacgctgaatgtacggtgggacccagct
gatggcaatgtacgtcagtacagagttctgtatgttccatccagtggtggagttgaggac
gaggcaatagtatctggaggcacaacctcaacggttctaaggagtctgcagtcagataca
gcctacaccataactgtggtgcctatttatactgagggagaaggtggccgtctctcaggc
actggaaagacattggtccgaggatccccaaggaatattcaagttttcaatccaactcct
aatactttgaatgttcgatgggaacctgcaccaggacaagttcaacaataccgggttgtc
tatgctccgctaaggggaacccggcctcctgagtctgtcgttgtaccaggagggactact
acgactgtcctagaacgtctgatgcctgacactccttattctgttaatgttgtcgcaata
tatccagatggagaaggtggacaagtcaacagtgatggaaaaacattgcctcgcagtggt
ccaagaaacatccgtgtatatgatccaaccaccaacagcctcactgtaaactgggaacat
gctgatggtcccgttcagcaatatagaattgcttatgcaccgaccacgggagatcccatt
gaagaatttacatatgttcctggaagaacaaacaaggtcattttaccgaatcttcaggct
gacactccatacaggattaatgtagtggctgtttatgcagatggagatggtggagatcta
acaggacatggcagaacagttggcctacttggtcctcggaatctccgtgtctcagatgaa
tggtatacccgattccgtgtatcttgggatcctgcaccaacaccagttttggggtacaag
cttgtttatcagtcaacagtggcagatgaaacaatggaagtatttgttggtgatgtgacg
acctatacactccagaatctgcttcctgggacaacatacgatcttaaggtttttgcacaa
tatgatggaggactcagtggagtgctacctggagaaggcacaacattatacttgaatgtt
actgatctgacaacataccaggttggttttgactcgttctgcatccgatgggctcctcat
agggcagcaacctcctacagaattaaactaaacccacttgacccttcaagacttggacaa
caagaagtgacagtcaacggggcagagtcaacttattgcttcagtggtctctctcctgat
gccttgtacaatgcaacagtgtatacccagactccaaatcttgaaggacctggagtcagt
gtacgagaaagaactctgattaaaccaactgaagcaccaactccaccaccaacacctcct
ccacccccaacaataccacctgcatgggaaatctgcaaaggtgctaaggcagatgtggta
ttcctgattgatggctcatggagtattggtgatgataacttcaacaaagttcttcagttt
gttttcagcaccattggagcttttgatacaataagtccagaaggaatgcagatatctctt
gcacaattcagtgatgatgccaggactgaattcaagctgaacacatataaggaaaaaggg
acaacacttgctgctcttcagctggtgcgttaccgaggaggaaacacaaagactggtgta
gctttgaagtatgtaggtgaaagggtcttcaccacagaaaacggcatgaggaaaaatgtt
ccaaaggttcttgttgtggtaacagatggaagatcacaagatgaagttaaaaagcatgct
gctacattacagcattcaggttacagtgtgtttgtcattggtgtctcggatgtggactat
acagagctgagaaatatcggaagcaaaccaagtgaacgccatgtctttgtagtggatgac
tttgatgcttttgcaaaaattcaagataaccttattaccttcctctgtgaaacggcaacc
tcaacttgccctctgatttatttgaatggatatacctcaccaggcttcagaatgcttgaa
gcatttaacctgacagataagacatttgctactgttcagggagtgtctatggaaccagga
tcctttaacacctttactgcctacaggcttcacaaaaatgcctatctaaaccaacctacc
aaagaggttcacccagaaggattaccacctgcctacactattatattcttattccgaatt
cttcctgacacaccaaatgaggcttttgacatttggcagattacagataaagataataaa
ccccaagttggagtaactctcgatgcttctagcaagaccgtatcattctacaacaaagac
actagaggagagatgcagaaggtaacctttgataaagaagaagttaaaagaatgtttttc
ggaagcttccataagattcatatagtcgtctccccgaagagtgtaaagatacatattgac
tgcaaagagattatggaaaaagaaattaaagaagcttccaacattactctggatggttct
gaagtacttggcaaaatggtgaagtcgagaggctcgaaaggagaatcagcaacgttccag
ctccaaatgtttgatatggtgtgcagcgcaggctggaccagtagagacaagtgttgtgag
cttccatcgacgagggatgaagcaaaatgtcctgctcttccacatgcatgcacatgtgca
caagacagtgttggcccacaaggacctcctggacccccaggttatcctggtaataaaggt
cctagaggagaaagaggtgaaaatggcccacctggtcccttgggtcctcgtggtgatatt
ggtttgccaggaccacaaggacctccaggtcctcaaggacctaatgggctgtcaattcca
ggagaacgaggtcgtgaaggaccaaaaggtgatccaggagatgctggtttgccaggtcat
cccggaccacaagggtcaatcggtgctatgggccctgtcggtgcagcaggacccaggggc
cctccaggaaaggaaggaccatcaggccctagaggcccaccaggacaaatgggtgcacca
ggtgcacctggtatgccaggtccaactggaaagccaggaaaaccaggagatcttggatca
ccgggccctgctggcataagaggagaaaagggtgaaaggggagattttgcatctcagaac
atgatgcggtcaatagccagacaggtctgcgaacagctaatgaatggtcaactgagcaga
tttaataacatgctgaaccaaattccaaacggctattattccaacaataataaccctggc
ccacctggcccaccaggaccttctggccctcaaggtcctcgaggagaaccaggtcaagct
gggcgttctggcttccctgggactccaggagaaccaggacaagcaggtgaaagaggtgta
ccaggagaaaagggtgaacgtggcaacccaggaactggatctcagggaccaagaggttta
cctggaccacccggcccatcaggagaatcacgaacaggacctccaggatctcgaggccca
ccaggaccacctggtccaccaggccgccatggcatccctggagtaaggggtccccaaggt
ccaccaggatattgtgactcttctcaatgtgttggcattccttacaatggaggccaaggg
ttcccaggaccctatcagcctccaccagaaacccacgttgtacctttaactgaggaagag
actgaagactatgacactgaaatgcaatcacctggttattcatga
DBGET
integrated database retrieval system
