Polypterus senegalus (gray bichir): 120530631
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Entry
120530631 CDS
T08668
Symbol
usp40
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 40
KO
K11869
ubiquitin carboxyl-terminal hydrolase 40 [EC:
3.4.19.12
]
Organism
psex
Polypterus senegalus (gray bichir)
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psex01002
]
120530631 (usp40)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psex04121
]
120530631 (usp40)
Enzymes [BR:
psex01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
120530631 (usp40)
Peptidases and inhibitors [BR:
psex01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
120530631 (usp40)
Ubiquitin system [BR:
psex04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
120530631 (usp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
RoxA-like_Cyt-c
Motif
Other DBs
NCBI-GeneID:
120530631
NCBI-ProteinID:
XP_039610987
LinkDB
All DBs
Position
6:complement(69007612..69186809)
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AA seq
1173 aa
AA seq
DB search
FKEDDVFEALFNLGQEELGCLADRNKPGAKVRVIPLELQRLFVQLLLVDQQAASTTDLTD
SFGWTSKEESNQHDVQELNRILFSALECSLISTLGNDLINKLYHGIVVNQIICKECGNLS
ERQEDFLDLTVAVKGVHSLEEALYSMFVEEELFDGNNRYRCSGCNNLVRATKSAKLRHLP
PFLTVSLLRFNFDFAKCERYKETGKYTFPLKINLKPFSEQVDQAIADYDYELFSVIIHKG
GCYGGHYHVYIRDVDELGNWQSPGEVKPKPKMSLKEMKINGLLDLDDPLSIIKTILAKEE
GSGVRTDQLGQKLLEQVGISWNKKYRKRFGSIWKFIQQNPDVFYMDSDGSTVHLKCNKEP
GLDSDDQTLLSSELLTCTNMSCEGHWFDFNDSVVLPIQIKDIQKQFEGKESAYMLFYRKS
CLKRPSDARQNPKFKVPAHLIEETEQENMKLQKLRADFDLAKNLIEIHVHQGSKYHFFNG
ALHPYDQITSILNLHFDKRKTVRDLREVIYQQLGSKDDGSELTFAKRLPAGLHLYDHLTD
DNESISNVGIKQGSDLFLWNGKEVNGVTLKMGIEFEPVLLNIICLNESKEITGGATEFKE
TQQCFARDTLLHDACEAVIQVELSKEFNIYHQRKGQKFHSNKWTKYSATDFLKTISDLSL
EDGDSILVVNPHNGDSCLLKQSGNELTLVLESEWLEVEYFPNRKSSQNEKKTVKVPADER
TLLSEIKLKAIEELELEISLESKSCLRQIDRNGKLLPPVRDDATVNEAGVKLKSTLALCP
GCAPTSTQIFLYYIVGADPQTEMEIMVEESTTVKECLKMLLDLTGLKGDCWHLRKVDWCY
EAGEPLNQEDAVLKDVNLLSGDTLVIVEGKLPPKGFLKLPVWIYPMQSYYSMVDQDYQTD
EISYQISKLNISVSDVCEGELQYSGEMEISNEATLEDLKIQAMTLPYLHNISVPSAEFLR
AWILEKKRPTKILKGNHNRLKKLNIESGSDICIQLLKKEENLGSKELLLKVQMSVPGEKQ
YYPAEDLIWDTTKECTALALRQRIASHFSLSLDQIDIAKYFPEKFEWMVISSWTQQVSKR
KKRKNKQCLQESPFYLKDGDIIGVKNLLVDSNKEFSTWKDDFGKEKIKQDTEDKKKRGQG
VLFENEKTSTEKKPYSRCRKPEATLSINVGVFR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
ttcaaagaagatgatgtatttgaagcattatttaatttgggccaagaagagctgggatgc
ttggcagacagaaataaacctggagccaaggtgagagtaattcctttggaactacagcga
ctctttgttcagcttttgcttgttgatcagcaggctgcttctactacagatctcacagat
agctttggatggaccagcaaagaggaatcaaatcaacatgatgtacaggagctaaatcga
attctcttcagtgctttagaatgctcacttatttctactttaggaaatgatcttattaac
aaactatatcatggaatagtagtcaaccaaataatttgcaaagaatgtggaaatctcagt
gaaagacaggaagattttttggatttaacagtggctgttaaaggagtgcacagcctggaa
gaggcactttatagtatgtttgtggaggaggagctctttgatggtaataatcggtatcga
tgtagtggctgtaacaatttggtcagagctacaaagtctgccaaactgcgacatttgcct
ccttttctcactgtgtctctattaaggtttaattttgattttgccaaatgtgaaagatac
aaggagactggaaaatacacattccctttaaaaatcaacctcaaacctttttctgaacag
gtggaccaagcaattgctgattatgactatgagcttttttctgtaattatacataaaggt
ggctgttatggtggtcattaccatgtttatatcagagatgttgatgaattaggaaactgg
cagtctccgggagaagtgaaacctaaacccaaaatgtctctcaaggagatgaaaataaat
ggtcttctagacttggatgatcctctgtccataattaaaactatactagctaaggaagag
ggcagtggtgtcaggactgatcagctagggcagaaacttcttgaacaagttggaatttca
tggaataaaaagtatcggaaacgatttgggtcaatatggaagtttatacaacagaaccct
gatgtattctacatggattctgatggaagcacagttcacttaaaatgcaacaaggaacca
ggactggattctgatgatcagacacttctgtcatcagagttgcttacttgtacaaacatg
agttgtgaaggtcattggtttgatttcaatgattctgtagttctgccaattcaaataaaa
gatattcagaaacagtttgagggcaaagaaagtgcctacatgcttttctacagaaaatca
tgcctaaagagaccttcagatgcaagacaaaatccaaagttcaaagttcctgcacattta
atagaagaaacagaacaagaaaatatgaagctccaaaaattgagagcagactttgattta
gcaaaaaacttgattgaaattcatgtacaccagggaagcaaataccactttttcaatgga
gctttacatccatatgatcagattaccagcattcttaatcttcattttgacaaaaggaaa
acggtcagagacctaagagaagttatatatcagcaactgggatcaaaggatgatggttca
gaacttacattcgcaaagagactacctgctgggctacatctctatgaccacttaactgat
gataatgaatctattagtaatgtaggaattaagcaaggatctgatctgtttttgtggaat
ggaaaagaggtcaatggtgtaaccttgaagatgggcatagagtttgagccagtgttgcta
aatatcatttgtcttaatgagagtaaagaaataactggaggtgctacagagtttaaggag
acacaacaatgttttgctagggacacattgttgcatgatgcttgtgaggctgttatccag
gtggagctttcaaaagaatttaatatatatcatcagcgcaagggtcagaaatttcacagt
aacaagtggactaagtactctgcaactgacttccttaaaaccatctcagatttgtcactt
gaagatggagactccattttagttgtcaatccacataatggtgattcttgtctcttaaag
cagtctggaaatgaacttaccttagtgttagaatcagagtggctagaagtagaatacttt
ccaaacagaaaatcctctcagaatgagaagaaaacagtcaaggttcctgctgatgaacga
acgttgttgtctgaaattaagcttaaagctattgaagaacttgagctggaaattagtctt
gaaagtaaaagctgtctgaggcagattgacagaaatggaaagctcttgcccccagtgcgt
gatgatgctactgtaaatgaagcaggtgtgaaattaaaaagcactttggcactttgtcct
ggatgtgcaccaacatcaactcagattttcctttattacattgtgggagcagatcctcaa
acagaaatggaaatcatggttgaagaaagtaccacagtcaaggagtgcctaaagatgctg
ttggatttgacaggtttgaaaggggattgttggcatttgagaaaagtagactggtgctat
gaagccggagaaccactaaaccaagaggatgcagtgctaaaagatgtcaacctattaagt
ggcgatactttagtcattgttgaaggaaagctacctcctaagggttttctgaaattgcct
gtttggatatatcctatgcaaagttactattcgatggttgatcaagattatcagacagat
gaaatttcctaccagatatctaaattgaacatttctgtctctgatgtatgtgagggagag
cttcagtattctggggaaatggaaatatcaaatgaagctactctagaagatcttaaaata
caggcaatgaccttgccatatctccacaatatttctgtaccatcagctgagttcttgaga
gcatggattctggaaaagaaacgcccaaccaaaatcttgaaaggaaaccataatagactt
aagaaacttaatattgaaagtggatcagatatttgtattcagcttctgaagaaggaagaa
aatttagggtctaaggagctcttgctgaaagttcagatgtctgttccaggggagaagcag
tactatcctgcagaggatttaatctgggacactaccaaagaatgcacagccctagcatta
cgacaaagaattgcatcgcatttttcactgtcattagaccagattgatatcgctaaatat
tttccagaaaaatttgaatggatggttatttccagctggacccagcaggtttcaaagcgt
aaaaagaggaaaaataaacaatgcttacaggaatcaccattttacttgaaagatggagac
attattggtgtcaagaatttgcttgttgatagcaataaagaattcagcacatggaaagat
gactttggcaaggagaaaatcaagcaagatacagaggataaaaagaaaagggggcagggg
gtcctttttgaaaatgagaagactagcactgaaaagaagccctattcccgatgcagaaaa
cctgaagcaaccctttctataaatgttggggtcttcagatga
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integrated database retrieval system
