Polypterus senegalus (gray bichir): 120542743
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Entry
120542743 CDS
T08668
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D-like
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
psex
Polypterus senegalus (gray bichir)
Pathway
psex04010
MAPK signaling pathway
psex04020
Calcium signaling pathway
psex04260
Cardiac muscle contraction
psex04261
Adrenergic signaling in cardiomyocytes
psex04270
Vascular smooth muscle contraction
psex04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
psex00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120542743
04020 Calcium signaling pathway
120542743
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
120542743
09153 Circulatory system
04260 Cardiac muscle contraction
120542743
04261 Adrenergic signaling in cardiomyocytes
120542743
04270 Vascular smooth muscle contraction
120542743
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psex04040
]
120542743
Ion channels [BR:
psex04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120542743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
GPHH
Ca_chan_IQ
PKD_channel
FAM176
Motif
Other DBs
NCBI-GeneID:
120542743
NCBI-ProteinID:
XP_039631314
LinkDB
All DBs
Position
13:76576508..76786861
Genome browser
AA seq
2106 aa
AA seq
DB search
MYETDDNHRSDGPDTYSNPSESEERNGIPWPGLNGVVGEKIVNGTDTLNSTTSSTATHKK
KPQYSKNKCQGNTSANRAPRALFCLRLNNPIRRAAISIVEWKPFDIFILMAIFANCVALG
VSIPFPEDDSNTTNHHLEQVEYVFLIIFTIETFLKIIAYGLVMHPSSYIRNGWNLLDFVI
VIVGLFSVVLEQMTHKPGESHHMGGKPGGLDVKALRAFRVLRPLRLVSGVPSLQIVLNSI
MKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHKTCFYTGTDINVEDDPAPCAFAGHGR
QCLQNGTECRGKWEGPNGGITNFDNFFFAMLTVFQCITMEGWTDVLYWMNDAMGYELPWV
YFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQMEEDLTGYLDWITQ
AEDIEPEDEDDEEEGKKRVTLADISDKKRGKHGWFSHSSETHASLPTSETSENTETVEED
HHTDCCAACMAKMMKNKVCRQLRRWNRACRRKCRVAVKSVVFYWLVLLLVFLNTLTIASE
HYNQPDWLGQIQDIANKVLLSLFTLEMLLKMYSLGLQGYFVAFFNRFDCFVVCGGIMETI
LVEFEVMPPLGISVLRCVRLLRIFKVTRHWASLSNLVASLLNSMKSIASLLLLLFLFIII
FALLGMQLFGGKFNFDETQTKRSTFDTFPQALLTVFQILTGEDWNSVMYDGIMAYGGPVF
PGMIVSVYFIILFICGNYILLNVFLAIAVDNLADADNINTNKKGKEGEKAESVTEAKESE
VNGDVKVDVDGYEEQEEGSEGAEEDAVSESQSTSNIDKLADFAPKEKVTPIPDGSAFFCL
SKTNPIRVACHALINHHIFTNLILVFIILSSISLAAEDPIRAHSSRNQVLGYFDYAFTSI
FTVEILLKMTVYGAFLHEGSFCRNWFNLLDLLVVSVSLISFGIHSSAISVVKILRVLRVL
RPLRAINRAKGLKHVVQCVFVAIRTIGNIMIVTTLLQFMFACIGVQLFKGKFYSCTDEAK
YTPEHCKGTFIVYKDGDVSHPMVRERIWHNSDFNFDNVLSGMMALFTVSTFEGWPALLYK
AIDANAENEGPIYNYRVEISIFFIVYIIIIAFFMMNIFVGFVIITFREQGEQEYKNCELD
KNQRQCVEFALKAQPLQLYIPKNKFQYKFWAMVNSTWFEYIMFVLILLNTITLAMQHYNQ
SQAFNYAMDILNMVFTGLFTVEMVLKITAFQPKHYFCDAWNTFDALIVVGSVVDIAVTEV
SSSEDSSRISITFFRLFRVMRLVKLLSKGEGIRTLLWTFIKSFQALPYVALLIAMIFFIY
AVIGMQTFGKIALQDSTQINRNNNFQTFPQAVLLLFRCATGEAWQEIMLASLPGKRCDPE
SDFGPGEEFSCGSNFAIIYFISFFMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDE
FKRIWSEYDPEATGRIKHLDVVALLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTV
TFNATLFALVRTALKIKTDGNPEEANEELRVVIRKIWKRMKPKILDEVIPPREEEEVTVG
KFYATFLIQDYFRKFRKRKEKGMLGSEPEPSNSSALQAGLRTLQNIGPEIRLAMSCDLEG
GEEEDEEEDEEEEEEDAGEDDDAHYKSDSTISNHTGHVSVDRRSSKSSVAAQSTHSIGSI
GGNSGGGEGGESMTNGGVGHRRVSVASLHKNHVPNGGMTSGQATENSDAGGGEDDTNSKP
GTDHFPKAISNSRARYYDRYMRRDSNEAYRSAGRRNEVVLEEPGEESYSEEQGYYSREEN
TESTASRERQIYPDNRSTVQGQGEGLYNTQAPNATYYGGHYINGYGEARRVTRRRLLPPT
PTGHKPAFNMQCLRRQGSSDDIPIPGTYHQNSPPCRARTQTYGSYDSRRSTSCSSTGSSH
SWATSGPRRGRLLYAPLILVEEDGSGLWGDKKSGSASLPTAACPSWYASDATGNGARQPY
HAYTTLHVPTHLQRGYSEKRGSADSLVEAVLISEGLGLYAKDPKFVAFAKREIADACHMT
IDEMESAASDLLNRNMSSRSTGGNSGVLQQKEIEQSGLGLLYSDEEPIRCKEEEDLADEM
TCVTSF
NT seq
6321 nt
NT seq
+upstream
nt +downstream
nt
atgtatgagaccgacgacaaccacagaagtgatggcccagatacatactcaaacccaagt
gagagtgaggaaagaaatggaataccatggccagggttaaatggtgttgttggagagaaa
atagtaaatggcactgatacactgaactcaaccacaagctccactgctacacacaaaaag
aaaccacaatacagcaagaataagtgccagggaaacacttccgccaaccgtgctcctcga
gcactgttttgtctgcgactcaacaatcctattcgccgtgctgctatctccattgttgag
tggaagccttttgatatcttcatccttatggccatttttgctaactgtgtagcactgggt
gtgtcaatacccttcccagaagatgactcaaatacaactaatcaccatttggaacaagtg
gaatatgtctttcttattatatttaccattgagacttttttaaaaatcattgcatatggt
ctagttatgcatcccagttcgtacattcgcaatggctggaatttactggattttgtcatt
gttattgtagggttgttcagtgtggtgcttgaacagatgacacacaaaccaggggaatcc
caccatatgggaggcaaaccaggaggattggatgtaaaagctttgcgtgcattccgagtt
ttgcgcccacttagactggtctctggtgtgccaagtttgcagatagtcttgaactccatt
atgaaagccatggttcctcttcttcacattgctttactggtcttatttgtcatcatcatc
tatgcaatcattggccttgagttattcattgggaaaatgcacaagacatgcttctacact
ggcactgacataaatgtggaagatgacccagcaccatgtgccttcgcaggtcatggccgc
cagtgtctgcaaaatggaactgaatgccgtggaaagtgggaggggcctaatggtggtatc
accaattttgacaacttcttttttgcaatgttgactgtttttcagtgtatcacaatggaa
ggatggactgatgttctatattggatgaatgatgccatgggatatgaacttccttgggtg
tattttgtcagtcttgtcatctttggatccttttttgtgcttaatcttgtcttgggtgtc
cttagtggagaattctccaaggaacgagagaaagccaaggctcgtggtgattttcagaaa
cttagagagaagcagcaaatggaggaagatcttactggttatttggattggatcacacaa
gctgaagatattgagcctgaagacgaagatgatgaggaagaaggcaaaaagagggtcact
ttggctgacatctctgataagaaaagaggaaaacatggatggttcagtcattcctctgaa
actcacgcaagtttgccaaccagtgagacatcagaaaacactgagacagtagaagaagat
caccacactgattgctgtgctgcttgcatggccaagatgatgaaaaacaaagtatgccgt
cagttacgacgatggaatagggcttgtcgccggaaatgcagggtggctgtaaagtcagtc
gtgttctattggctagttcttcttcttgtgttcctgaacactttgacgattgcatcagaa
cattacaatcagcctgactggctgggccagatacaagatattgctaacaaagttctcctg
tccctgtttacgcttgagatgcttttgaagatgtacagtcttggtttgcagggctacttt
gtagctttcttcaatcgtttcgactgtttcgttgtgtgtggaggcattatggaaactatc
ctggttgagtttgaggtcatgccacccttgggcatctctgttcttcgctgtgtgcggctg
ctgcggattttcaaagttaccagacattgggcttcactgtccaaccttgttgcctcgctg
ctcaattccatgaagtctattgcatcactcttactcctactttttctgttcatcatcatt
tttgccctgctgggaatgcagctctttggagggaaatttaattttgatgaaacacaaacc
aaaaggagcacttttgacacctttcctcaagctttactaactgtatttcagattctaact
ggcgaagattggaattctgtcatgtatgatggaatcatggcttatggaggtcctgttttt
ccaggaatgattgtcagtgtttatttcatcattcttttcatctgtggtaactatattctc
ctcaatgtgttcttggctattgcagtggacaatctggcagatgctgacaatatcaacact
aacaagaaaggcaaagaaggagaaaaagcagaaagtgtaactgaagctaaagagagtgaa
gtaaatggagatgtgaaggtggatgttgatggttatgaagaacaagaagaaggtagtgaa
ggagcagaagaagatgcagtgtcagaatctcagtccacctccaacattgacaagctggct
gattttgctcccaaagaaaaggtcacgcctatcccagacggcagtgctttcttctgtctc
agcaagaccaatccgatccgtgtggcatgccatgctctgatcaatcaccacatattcacc
aatcttatacttgtgttcatcatcttaagcagcatttctctggcagcagaagatcccatt
agagcacattcatctcggaatcaggtgcttggctattttgattatgctttcacttcaata
ttcactgttgaaatccttctcaagatgacagtatatggagcatttctccatgaaggttcc
ttctgcagaaattggtttaatctcttggatttgctagtggtcagcgtttcgctcatctct
tttggaatacactccagtgcaatctcagttgtcaaaatactacgagttcttcgggttctc
aggcctttgagagccattaatcgtgccaaaggattgaagcatgtggtccaatgtgttttt
gttgctataaggaccattggcaatataatgattgtgacaacacttcttcagttcatgttt
gcttgtattggagttcagctttttaagggcaagttctatagctgcactgatgaggctaaa
tacactccagagcattgcaagggaacattcatagtgtacaaagatggtgatgtgtctcat
cccatggtccgggagcgaatctggcataacagtgacttcaactttgacaatgtgctgtct
ggaatgatggcactcttcacagtgtctacatttgagggctggccagctttattatataag
gcgattgatgccaatgcagagaatgagggacctatctacaactatcgtgtggagatctct
atcttcttcattgtttatatcattatcatagctttcttcatgatgaacatctttgtgggt
tttgttattatcacttttcgtgagcaaggagaacaggagtataaaaactgtgaactggac
aaaaatcagcgtcaatgtgtggaatttgcactgaaggctcagccactccaactgtacatt
cccaagaacaagtttcagtataaattctgggccatggtgaactcaacttggtttgaatac
atcatgtttgtgctcatccttctgaacacaatcactttggccatgcaacactataaccag
tcacaagcctttaattatgcaatggacatactgaacatggtctttactggactgttcact
gttgagatggtgcttaagattactgccttccaaccaaagcactacttttgcgatgcttgg
aacacatttgatgctctgatcgtagttggcagtgtggttgatattgcagtaactgaagtc
agtagttcagaggacagttccagaatctccatcacattctttcgtctcttccgtgtaatg
cgattagtcaaactcctgagcaaaggggaaggcataaggactctactatggaccttcatt
aaatccttccaggccctgccatatgttgctctgctgatcgcgatgatcttcttcatctat
gctgtcattggaatgcagacttttggaaaaattgctttgcaagattcaactcaaatcaac
cgaaacaacaacttccagactttccctcaagctgtattgttacttttcaggtgtgcaaca
ggagaagcctggcaagaaatcatgctggctagccttcctggaaagcgatgtgatccagag
tcagactttggccctggagaagaattctcatgtgggagtaactttgctatcatctacttt
atcagcttctttatgctatgtgcctttttgattattaatttgtttgttgctgtcattatg
gacaactttgactatctgacaagggactggtcgattcttgggccacatcacttggatgag
tttaagaggatctggtcagaatatgaccctgaagcaacaggtcgcatcaaacaccttgac
gtagtagctctgttgcgcagaattcaaccacctctcggttttggtaagctgtgtccgcac
agagttgcctgcaagaggctcgtggctatgaacatgcccctgaacagtgatgggacagta
accttcaatgccacactgtttgccttggttcgtacagcactgaagataaaaacagatggc
aaccctgaggaagccaatgaggaactgagggttgtcattaggaagatctggaaacgaatg
aagccaaagattttggatgaggtcattccacctcgtgaggaggaagaagtcacagtgggt
aaattctatgccacattcctcatccaggattacttcagaaagtttcgaaaaagaaaggag
aaaggtatgctgggtagtgaacctgaacccagcaattcatctgcattgcaggctggcttg
cgtacattgcagaatattgggcctgaaatccgcctggcaatgtcatgtgacctggaaggg
ggggaggaggaggatgaagaagaagatgaagaggaagaggaggaagatgcaggagaggac
gatgatgctcattataagagtgacagcacaatatcaaaccacacaggccacgtgtctgtc
gaccgccgcagttcaaaatcctctgtagctgctcagtctacccactccattggcagtata
ggtggtaattcaggaggaggagaaggaggagaatccatgaccaacggaggtgtgggacat
cggcgagtttcagtggcaagtctacataaaaatcatgttcctaatggtggtatgacctca
gggcaggcaacagagaacagtgatgctggaggaggagaggatgacactaacagcaagcct
ggaacagaccattttcccaaagccatttctaacagtagagctcgttattatgacagatat
atgagaagagactccaatgaggcttacagatcagcaggacggcgcaatgaggtggttcta
gaagagccaggagaagagagctattctgaggagcaaggttactacagtagagaagagaac
acagaaagcacagcatcacgagaaaggcaaatatatcctgataaccgttccacagttcaa
ggtcaaggggaaggattgtacaacacccaggcaccaaacgccacttattatgggggtcat
tacataaacggttatggtgaagctcgaagagtaaccagaagaagacttctgcctcccact
cctacaggtcacaagcctgcttttaacatgcagtgtttacggagacaaggcagtagtgat
gacattcccatccctggcacataccatcagaactcaccgccatgccgtgcacgcactcag
acatatggcagctatgactcccggcgtagcactagttgctcctctacaggctcctcacac
tcatgggctacatcaggacctcgtaggggaagactgctttatgctccccttatcctggta
gaagaagatggatcagggttatggggagataagaagtctggtagtgccagtctgcctaca
gcagcatgtccatcctggtatgcctcagatgctactggcaatggagcacgccagccctac
catgcttacacaactctgcatgtacccacgcaccttcaaagagggtacagtgaaaagaga
ggaagtgctgacagtcttgtggaagctgtcctaatttcagagggactcggcttatatgcc
aaggatccaaagtttgtggcatttgccaaaagggagattgcagatgcctgtcacatgacg
attgatgagatggagagcgctgctagtgatcttctaaaccggaatatgtcatccaggagc
acagggggcaacagtggagttcttcagcaaaaggaaatagagcaatcgggtttgggactc
ctttacagtgatgaggaaccaattcgatgcaaggaagaggaggatctggctgatgagatg
acttgtgttacttcgttctga
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integrated database retrieval system
