Stutzerimonas stutzeri RCH2: Psest_2179
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Entry
Psest_2179 CDS
T02391
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psh
Stutzerimonas stutzeri RCH2
Pathway
psh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Psest_2179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psh03400
]
Psest_2179
Enzymes [BR:
psh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Psest_2179
DNA repair and recombination proteins [BR:
psh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Psest_2179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
HTH_Crp_2
Motif
Other DBs
NCBI-ProteinID:
AGA86713
UniProt:
L0GIZ3
LinkDB
All DBs
Position
2334291..2336855
Genome browser
AA seq
854 aa
AA seq
DB search
MALEDYQRMRDFAATPEPAGKARPKSRKTQALQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPSVRRLAVHVEDHPLEYATFEGSIPAGHYGAGDVIVWDRGVWIPEGDPRDAY
RKGKLKFALEGEKLAGSWNLVRTQMDGKKEQWFLIKSRDEAARDESDYDIVAAEPDSVLS
DRTLVPRKRGAKARVAESPPSPVKAPAKQRAPRKQKEKVALDGALPAKLPESFKPQLATL
VDSVPAGDWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALAGLGLESGWL
DGEVVVPNEEGTPDFQALQNAFEAGRSGNILYYLFDIPYLNGMDLRDVPLEQRRAALREV
LERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSKRSSSWVKIKCSNRQ
EFIIVGYTQPKGTRTGFGALLLGLHDEKGKLLYAGKVGTGFNQATLQGLHKQLKKLETDK
SPLDKAAPAADVRGAQWLKPELMCEVAYAEMTRQGVVRHSVFHGLRSDKPAEAITHERAK
PVASQTKASAARQPDSIGSARIKISNPERVIDPSSGISKIELARFYAQIAPWALPQLQNR
PLALVRAPEGITGELFFQKHADKLAIPHITQLDPALDPKHGALLVIDSVEALVGAAQMGT
IELHSWNAVAPDLEHPDRFVLDLDPDPALPWKRMLEATQLTQTLLDEIGLASFLKTSGGK
GLHIVVPLDSVHDWTEVKSFSQAIARYLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGA
STVAPYSVRAREGLPVSVPIHREELADLKGANLWTVRNLLERLQELGDDDPWANIGTTRQ
RLTKQMRERLGVKD
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaagactaccaacgcatgcgcgactttgccgccacgccggagcccgccggc
aaggcacggccgaagtcgcgcaagacccaggcgttgcagtactgcatccagaagcacgac
gccacccgcctgcattatgactttcgcctggaactggacggtacgctgaagagttgggca
atccccaaggggcccagcctcgacccgagcgtgcgccggctggccgtgcatgtagaggac
catccgctggaatacgccacgttcgagggcagcatcccggcgggccattacggtgcaggt
gatgtgatcgtctgggatcgtggcgtgtggatacccgagggcgatccgcgcgacgcgtat
cgcaagggcaagctcaagttcgcacttgaaggcgaaaagctcgccggcagctggaacctg
gtgcgcacgcagatggacggcaagaaggagcagtggttcctgatcaagtcccgcgacgag
gcagcgcgcgacgagagcgactacgacattgtcgccgccgagccggatagcgtgctcagc
gaccgtacgctggtgccgcgcaagcgtggggcgaaagcacgggttgctgagtcaccgccg
agtccggtcaaggcgccagccaaacaacgggcgccacgtaagcagaaggaaaaggtcgcg
ctcgacggggcgctcccggccaagttgccggagagtttcaagccgcagctggccacgctg
gtcgattcggtaccggcgggtgactggcgctacgaaatcaagtttgacggctaccgaatg
ctcgcgcgcatcgatgccggcgaggtcagactattcacccgcaacggccatgactggacg
gcgaagatgccacagcaggctgccgcactcgccggcctggggcttgaatccggctggctg
gatggcgaagtcgtggtgccgaacgaggagggcacgccggatttccaggcgttgcagaat
gcgttcgaagccggacgcagcggcaacattctttattacctcttcgacatcccctacctg
aacggcatggatctacgcgacgtcccgctggaacaacgccgcgccgcgctgcgtgaagtg
ctggaacgcagcgacagcgagctgctgcgcttttccgaggatttcaccgaacagccggac
agcattctcgaaagcgcctgtcagatgaagctcgaaggcctgatcggcaagcgcgctggc
agcacctacacctcgaaacgcagtagcagctgggtcaagatcaagtgcagcaatcggcag
gaattcatcatcgtcggctacacccagcccaagggcacccgtaccggcttcggcgcgcta
ctgctcgggctgcatgacgagaagggcaaactgctttacgcggggaaggttggcaccggt
ttcaatcaggcaacgctgcaaggcttgcacaagcagctgaagaaactggaaaccgataag
agtccgctggacaaggctgcgcctgcagccgatgtgcgcggcgcgcagtggctcaagccc
gagttgatgtgcgaagtcgcctatgccgaaatgactcggcagggggtggtccgccattcg
gtgttccatggcttgcgcagcgacaagccggccgaggcgattacccatgaacgggccaag
ccggtcgccagtcagacgaaggcgagcgcagcgcgccagcccgactccattggcagtgcg
cggatcaagatatccaatccggagcgggtcatcgaccccagcagcggcatcagcaagatc
gagctcgcccgcttctatgcgcagatcgcaccctgggcgttgccgcaattgcagaaccgg
cctctggcgctggtccgcgcaccggaaggcatcaccggcgagctgttcttccagaagcac
gccgacaagttggccatcccgcatatcactcagctcgacccggcgctcgacccaaaacat
ggcgcgctgctggtgatcgacagcgtcgaggcgctggtgggcgcggcacagatgggcacc
atcgaactgcacagctggaacgccgtggcgcccgacctggagcacccggatcgcttcgtg
ctggatctcgatccagacccggccttgccgtggaagcgcatgctcgaggcaacccaactg
actcagacgctgctggacgagatcgggctcgcgtcgtttctcaagaccagcggcggcaag
ggcttgcatatcgtcgtaccgctggacagcgtgcatgactggacggaggttaaaagcttc
agccaggccattgccagatatctggcgaaacttctgccgtcgcacttctcagcagtcagc
ggcccgaagaaccgcgtcggacgcatcttcatcgactatctgcgcaacagccgcggcgcc
agcaccgtagcgccgtattcggtacgcgcccgcgaaggcctgccggtttccgtgcccatt
caccgcgaagagctggcagacctcaagggcgccaacctgtggacggtgcgcaacctgctc
gagcgcctacaggaactgggtgacgacgacccatgggcgaacatcggcacaacccgtcag
cgcctgaccaagcagatgcgcgagcgtcttggcgtgaaggattaa
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