Pimelobacter simplex: KR76_09220
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Entry
KR76_09220 CDS
T03528
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psim
Pimelobacter simplex
Pathway
psim03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KR76_09220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psim03400
]
KR76_09220
Enzymes [BR:
psim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KR76_09220
DNA repair and recombination proteins [BR:
psim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KR76_09220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIY16896
UniProt:
A0A0A1DHN7
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All DBs
Position
1881195..1882124
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AA seq
309 aa
AA seq
DB search
MPDLLPMLATPGTHVPPGEEWCHEVKWDGVRALGAVAAGAVTLTSRNGNRITPAWPELQT
PPSGVRDLVVDGEIIALNERGVPDFRVLADRMHVRKAATVARLAARIPATYMVFDLLRLD
GEDLCPLPLHERRRRLGELDLAAAGWQVPAEYDDGAMLHQATRAQGLEGIVSKRRDSVYR
PGERSQHWLKLAHRHRGSYVIGGWRPQVGTSDRLAALLVGEPGPDGLLYRGRVGSGIGPK
QSRALTELLAPLARGATPFADDVPREDATGTTWVEPVVVIDVDTHGLGYQRLRQPSYQGV
RTDLTPEDL
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgacctgctcccgatgctcgcgaccccgggcacccacgtgccgcccggcgaggag
tggtgccacgaggtcaagtgggacggcgtccgtgcgctcggcgccgtcgccgccggcgcg
gtcacgctgaccagccgcaacggcaaccggatcacgccggcctggcccgagctgcagacg
ccgccgtccggcgtgcgcgacctcgtcgtcgacggcgagatcatcgcgctcaacgagcgc
ggggtgcccgacttccgggtcctcgccgaccggatgcacgtccgcaaggccgccaccgtc
gcccgcctcgccgcccggatcccggccacctacatggtcttcgacctgctccggctcgac
ggcgaggacctgtgcccgctgccgctgcacgagcgccgccgccggctcggcgagctcgac
ctcgctgcggcgggctggcaggtccccgccgagtacgacgacggcgccatgctccaccag
gccacccgggcgcaggggctcgagggcatcgtcagcaagcgtcgcgactcggtctaccgg
ccgggggagcgcagccagcactggctcaagctcgcccaccggcaccggggctcgtacgtg
atcggcggctggcgcccgcaggtcggcaccagcgaccggctcgcggcgctgctcgtcggc
gagccggggcccgacgggctgctctaccggggccgggtcggcagcggcatcgggcccaag
cagtcacgtgcgctcaccgagctgctcgccccgctcgcccggggcgcgacccccttcgcc
gacgacgtcccccgcgaggacgccaccggcaccacctgggtcgagccggtcgtcgtgatc
gacgtcgacacccacggcctgggctaccagcggctgcgccagccgtcgtaccagggcgtg
cgcacggacctgacccccgaggacctgtga
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integrated database retrieval system
