Phocoena sinus (vaquita): 116739547
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Entry
116739547 CDS
T07759
Symbol
USP42
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 42 isoform X1
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
psiu01002
]
116739547 (USP42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
psiu04121
]
116739547 (USP42)
Enzymes [BR:
psiu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
116739547 (USP42)
Peptidases and inhibitors [BR:
psiu01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
116739547 (USP42)
Ubiquitin system [BR:
psiu04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
116739547 (USP42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
116739547
NCBI-ProteinID:
XP_032459806
Ensembl:
ENSPSNG00000013999
LinkDB
All DBs
Position
15:83410390..83446104
Genome browser
AA seq
1227 aa
AA seq
DB search
MTTGDKASESSDPSTCQNQPGSSEAVSPGDMEAGSASWGTVSSLNDVSSHALSLGPVPGA
VVYSSSPVPEKSKPSPPKDQALGDGIAPPEKILFPSEKICLKWQQTHRVGAGLQNLGNTC
FANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQVLNHPGDVIKPMFVI
NEMRRIARHFRFGSQEDAHEFLQHTVDAMQKACLNGSNKLDRHTQATTLVCQIFGGYLRS
RVKCLNCKGVSDTFDPYLDITLEIKAAQSVNKALEQFVKPEQLDGENSYKCSKCKNMVPA
SKRFTIHRSSNVLTLSLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEPIIYDLYAVL
VHTGFNCHAGHYFCYIKASNDLWYQMNDSIVSISDIRSVLSQQAYVLFYIRSHDVKIGGE
LTHSAHSPGQSSPQPVISQRVVSNTQAASGFIGPQLPSHMMKNPPHLNGTGPLKEMPSSS
MASPNGNSSVSRTGPVNASTSVQDWPVNRPSVIPEHPKKQKITISIHSKLPVQKMPSQPT
LHSSSSESPNKPAPSSTITTSTAIQSTSSAPMMPASSKVTKQITLRESCPEPVTNGRSKL
SSGVLVPYGAESSEESDEEAKGLGKENSLRPAESARAPAPVAEDVGASPHELREPVALNG
ATSTDSDPKENSLPSGAASCQVQPALHSENPFSKANSLPGKLMPAPLPLLPEDRILETFK
LGSKGKGSTDEMSTTGTEERPPQDPEAELEAGSSAPDSCENLELVMSLSSKFKKVLSPSD
ASIKPTKEEVSENLLAKPEEALPSINTFCNTNKDTLGDDQLPKPCDPGNLTNDQSKPSQD
VKGTSPERPQAPAAAEAAGRLSPSPLSGTEGDCEPEPLGHSSRDRGTDVEGPPKSTGVSA
DGVPSPQLDRIAENRPEGVPEQSNGERGEDSKAGQKVQEACAVQEKTSSLRKVDRGHYRS
RKDRSSSGEHARDSRSGTEEQPRRKRPHHEWKRCRSERPEPCAAAPHAPCPGSLARSGHP
RSRSMGAPDQEWGRYHHAEAEHAWARENYPDGMRWGRFRYHHDRYASYPAREPWEWRPLH
GEREYDRAGPYSGRPHKDHYRGRKGHEPAAKERDRHRVSSPGAGPAHTPPPHPADKYAHN
KAALGAEDRGCDLAGQFHEHKNVKSRKRRYSSVGDKDSHVEKKAWRSLQKDPLEEPKVKK
HKKSKKKKSKDKHRERNSRRQQYSDLW
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaggtgacaaagcttcagaatcttcagacccatcaacctgtcagaaccagcct
ggcagttctgaggcagtctcacctggagacatggaggcaggttctgccagctggggtact
gtgtcttcattaaacgatgtttcaagtcacgcgctttctttaggaccagtacctggtgct
gtagtttattcaagttcacctgtacctgaaaaatcaaaaccatcaccaccaaaggatcaa
gctctaggtgatggcattgctcctccagaaaaaattcttttcccatctgagaagatttgt
cttaagtggcagcaaactcatagagtaggagctgggctccagaatttgggcaatacctgt
tttgccaacgcagcgctgcagtgtttaacttatacaccaccacttgccaactacatgcta
tcacacgaacactccaagacatgtcatgcagaaggattttgtatgatgtgtacaatgcag
gctcatatcacacaagtgctgaaccatcctggggatgttattaaaccgatgtttgtcatt
aatgagatgcggcgcatagctaggcacttccgctttggaagccaagaagatgcccatgaa
ttcctccagcacactgttgatgctatgcaaaaagcatgcttgaatggcagcaacaaatta
gacagacacacccaggctaccacactcgtttgccagatatttggaggatacctaaggtct
agagtcaaatgtttaaattgcaaaggtgtgtcagatacttttgatccatatctcgacata
acattggaaataaaggctgctcagagtgttaataaggcattggagcagtttgtgaagccg
gaacagctcgatggagaaaactcgtacaagtgcagcaagtgtaaaaatatggttccagct
tcaaagaggttcactatacacagatcttctaacgttcttacactttctctgaaacgtttt
gcaaattttactggtggaaaaattgctaaggatgtgaaataccctgagtatcttgatatt
cgaccgtatatgtctcagccgaacggagaaccgatcatttatgatttgtatgcggtactg
gtgcacactggcttcaactgccatgccggccattacttctgctacataaaagctagcaat
gacctctggtaccaaatgaatgactccatcgtatctatcagtgatattagatcggtactc
agtcaacaagcttatgttctcttttatatcaggtcccacgatgtgaaaataggaggtgaa
ctcactcattccgcccatagccctggccagtcctctccccaaccggtgatcagccagcgg
gttgtcagcaacacacaggcagcatccgggtttatcggaccacagcttccttctcacatg
atgaagaacccacctcatctaaacgggacaggacccttgaaggaaatgccgagcagctcc
atggcaagtcctaacgggaattccagtgtcagtaggactggccctgtcaacgcctcaaca
tctgttcaggactggccggttaacaggccctcagttattccagaacatcccaagaaacag
aaaatcacgatcagtattcacagcaagttacctgtgcagaaaatgccgtcacagcctact
cttcacagcagctcttcagagagcccgaacaagcctgccccctcatctaccattacgact
tctactgcaatacagtctacctcgagtgcccccatgatgcccgcgtctagtaaggtaacg
aagcagatcaccctgagggagtcctgccctgagcctgtgacgaacggcaggtccaagctg
agctccggcgtgctggtcccctatggcgccgagtcgtccgaagagtccgacgaggaggcg
aagggcctcggcaaggagaacagtctccgtcccgccgagagcgcgcgcgcccctgctccg
gttgccgaagatgtcggggcctctccgcacgagctccgagagcccgtggctctaaatggt
gctaccagtacggacagtgacccgaaagaaaacagcctaccctcgggtgctgccagctgc
caagtccagcctgccctacactcagaaaaccccttttctaaggcaaacagtctccctggg
aagttgatgcctgctcctttgccacttctcccagaagacagaatcttagagaccttcaaa
ctcggcagcaaagggaaaggctccacagatgagatgagtacaactgggacagaggagagg
cctccacaggaccctgaggctgagctggaggctggcagctccgctcccgattcctgtgag
aacctagagctggtcatgagcctcagcagcaaattcaagaaggtattgtcgccctcagac
gccagcatcaaacctaccaaagaagaagtctctgaaaaccttttggcaaaacccgaggag
gctttgcccagtatcaacaccttttgtaacaccaacaaggataccctcggggatgatcag
cttcctaaaccgtgtgacccagggaatttaacaaacgatcagagcaaaccgtcccaggac
gtgaaagggacgtcaccagagcgtccccaggccccggcagcagcagaagccgcggggagg
ctgagcccgagtcccttgtcaggtaccgagggcgactgtgagcctgagcccttgggtcac
agcagtcgggacagaggcacggatgtggagggtccccctaaaagcacaggggtgtccgca
gatggggtgccctctccgcaattagacaggatcgcagaaaaccgtccagagggggtcccc
gagcagagtaacggtgagagaggtgaagacagtaaggccgggcagaaggtccaggaggct
tgtgcagtgcaggaaaaaaccagcagcctcagaaaggttgaccgaggacattaccgcagc
cgcaaagaccgatcgtccagcggtgagcacgcgcgggacagcaggagcgggacggaggag
cagcctcgccggaagcggccccaccatgagtggaagcggtgccggtcggagcggcccgag
ccctgcgccgcggccccgcacgccccctgccccggatccctggccaggtccggccacccg
cgctcccggagcatgggggcccccgaccaggagtggggccgctaccaccatgctgaggcc
gagcacgcctgggcccgggagaactacccggacgggatgcgctgggggcggttcaggtac
caccacgacaggtacgcctcgtacccggcccgcgagccgtgggagtggaggcccctccac
ggcgagcgagagtacgaccgagccgggccctacagcggccggccccacaaggaccactac
agaggccggaagggccacgagccggcggccaaagagagggaccggcaccgcgtcagcagc
cccggggcgggcccggcccacacgccccctccgcaccctgctgacaagtacgcccacaac
aaggctgcactgggggctgaagacagaggctgtgacctcgccggtcagtttcatgaacac
aaaaacgtcaagtcacgaaaacggaggtacagtagtgtaggggataaagacagccatgta
gaaaagaaagcctggagaagcttacaaaaggatcctttagaggagcctaaagtgaagaag
cacaaaaaatcaaagaaaaagaaatccaaggacaaacaccgagagcggaattccaggcgt
cagcagtactcagacctttggtaa
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integrated database retrieval system
