Phocoena sinus (vaquita): 116741566
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Entry
116741566 CDS
T07759
Symbol
LDB3
Name
(RefSeq) LIM domain-binding protein 3 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116741566 (LDB3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
116741566 (LDB3)
Domain-containing proteins not elsewhere classified [BR:
psiu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
116741566 (LDB3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
DUF4749
PDZ
PDZ_6
PDZ_2
DUF3854
Motif
Other DBs
NCBI-GeneID:
116741566
NCBI-ProteinID:
XP_032464197
Ensembl:
ENSPSNG00000010047
LinkDB
All DBs
Position
16:36257418..36317901
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AA seq
721 aa
AA seq
DB search
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSPGDLVVAIDGVNTDTM
THLEAQNKIKSASYNLSLTLQKSKRPILISTTAPPIQSPLPVIPHQKDPALDTNSSLAAP
SPNPKARAIPGTPGNLEFGQTLSSSFSQTSVFSSHTEASDAGPPWGSPGAKVNLEGTLDS
LSPKAPRGSSQPRQYNNPVGLYSAETLREMAQMYQMSLRGKASGAGLLGGADYQERFNPS
ALKDSALSTHKPIEVKGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSL
PVKDLTVDSTSPVYQAVIKNQNKPEDEADDWARRSSSLQSRSFRILAQMTGTEYMQDPDE
EALRRSRPQASAYSPAVATSPAPAAHTYSEAPAAPAPKPRVVTTASIRPSVYQPVPASTY
SPSPGANYSPAPYTSSPAPAYTPSPAPAYSPSPAPAYTPSPAPSYNPAPYSGGPAESASR
PPWVTDDSFSQKFAPGKSTTTVSKQGLPRGAPAYNAPPAPQVSPLARGTVQRAERFPASS
RTPLCGHCNSIIRGPFLVAMGRSWHPEEFNCAYCKTSLADVCFVEEQNNVYCERCYEQFF
APVCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFS
TKCHGCDFPVEAGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDKPLCKKHAHAIN
V
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacagcgtgaccctgaccgggcctgggccctggggcttccgtctgcaggggggc
aaggacttcaacatgccactcaccatatcccggatcacaccgggcagcaaggccgcccag
tcccagctcagcccgggtgaccttgtggtggccattgacggcgtcaacacagataccatg
acccacctggaggcccagaacaagatcaagtctgccagctacaacctgagtctcacactg
cagaagtcaaagcgtcccattctcatctccacgacagcgcccccgatccagtcccctctg
cctgtgatcccccaccaaaaggaccctgctctggacacgaacagcagcctggcagcaccc
agccccaaccccaaggcgagggccatcccgggcaccccaggcaacctggagttcgggcag
acccttagctcctccttctctcagacctccgtcttctcctcacacacggaggcctctgat
gctggccctccatggggcagcccgggggccaaggtcaacctggaggggaccctcgactct
ctaagcccgaaagccccgcggggttcgagccagccaaggcagtataacaaccccgttggc
ctgtactcggcagagaccctgagggagatggctcagatgtatcagatgagcctccgaggg
aaggcctcaggtgctggactcctaggaggcgccgactaccaggaacgcttcaaccccagc
gccctgaaggactcggccctgtcgacccacaagcccatcgaggtgaaggggctgggcggc
aaggccaccatcatccacgcgcagtacaacacgcccatcagcatgtactcccaggacgcc
atcatggacgccatcgccgggcaggcccaggcccagggcagtgacttcagtgggagcctt
cctgtcaaagacctcaccgtagacagcacctctcccgtgtatcaggctgtgattaagaac
cagaacaagccggaagacgaggctgacgactgggcccgccgctcctccagcctgcagtct
cgctccttccgcatcctggcccagatgacggggacagaatatatgcaagaccctgatgaa
gaagctttgcgaaggtcaaggccccaggcctctgcctacagtcccgctgtggccacctct
ccagcacctgccgcccatacatacagcgaggccccagctgcccctgcacccaagccccgg
gttgtcaccactgccagtatccggccttctgtctaccagccagtgcctgcatctacctac
agcccatccccaggggccaattacagtccagccccctacacctcctcccctgcccccgcc
tacaccccttcccctgcccccgcctactccccctccccagcaccagcctacaccccctcg
ccagccccaagctataatcctgcaccctacagcgggggccctgcggagtctgccagccgt
cccccatgggtgacagacgacagcttctctcagaagttcgcccctggcaagagcaccacc
actgtcagcaagcaaggcctgccccgaggggcccctgcctacaacgcacccccggctccg
caggtgtccccccttgccaggggtaccgtgcagagggcggagcgcttcccagccagcagc
aggactccgctctgcggccactgcaacagcatcatccggggcccctttctggtagccatg
ggccgctcctggcacccagaagagttcaactgtgcctactgcaagacctccctggcagac
gtgtgctttgtggaggagcagaacaacgtttactgtgagcggtgttatgagcagttcttt
gccccggtctgtgccaagtgcaacaccaaaatcatgggggaagtgatgcatgccttgaga
cagacgtggcacaccacctgctttgtctgtgcagcctgcaagaagcccttcgggaacagc
ctcttccacatggaagatggggagccctactgtgagaaagactacatcaacctgttcagc
accaagtgtcacggttgcgatttccccgtggaggccggtgacaagtttatcgaagccctg
gggcatacttggcacgacacctgcttcatttgcgcagtctgccacgtgaatctggagggg
cagccattctactccaagaaggacaaacccttgtgcaagaagcatgcacacgccatcaac
gtgtag
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