Phocoena sinus (vaquita): 116743957
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Entry
116743957 CDS
T07759
Symbol
SIX5
Name
(RefSeq) homeobox protein SIX5
KO
K19474
homeobox protein SIX5
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116743957 (SIX5)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
116743957 (SIX5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
116743957
NCBI-ProteinID:
XP_032469078
Ensembl:
ENSPSNG00000006825
LinkDB
All DBs
Position
19:9195717..9199909
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AA seq
733 aa
AA seq
DB search
MATLPAEPSAGPAAGGEAVAAAATEEEEEEARQLLQTLQAAEGEAAAAAGAGAGEAAVKV
EGPGSPGVPGSPPEAAADPPTGLRFSPEQVACVCEALLQAGHAGRLSRFLGALPPAERLR
GSDPVLRARALVAFQRGEYAELYRLLESRPFPAAHHAFLQDLYLRARYHEAERARGRALG
AVDKYRLRKKFPLPKTIWDGEETVYCFKERSRAALKACYRGNRYPTPDEKRRLATLTGLS
LTQVSNWFKNRRQRDRTGGGGGAPCKSESDGNPTTEDESSRSPEDLERGAAPVAAEAPAQ
GSIFLAGAAPPAPCPASSSILVNGSFLAAGSSPAVLLNGSPVIINSLALGEASSLGPLLL
GGGGGAPAPQPSPQGASEGKTSLVLDPQTGEVRLEEAQPEAPETKGAQVAASGPPGEEVP
GPLPQVVPGPPPAATFPLPPGPVTSVAAPQVVPLSPPPGYPAGLGPTSPLLNLPQVVPTS
QVVTLPQAVGPLQLLAAGPGSPVKVAAAPGPANVHLINSGVGVTALQLPSATAPGNFLLA
NPVSGSPIVTGVAVQQGKIILTATFPTSMLVSQVLSPAPSLALPLKPDAAISVPEGALPV
APSPALPEAHALGALSAQPPPAPAAASLPFSPDSSGLLPGFQAPPPEGLLLSPAAVPIWP
AGLELSAGTEGLLEAEKGLGTQAPHTVLRLPDPDPEGLLLGATAGGEVDEGLEVETKVLT
QLQSVPVEEPLEL
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggctaccttgcctgcggagccgagcgcggggccggcggctgggggggaggccgtggcg
gcggcggcgaccgaagaggaggaggaggaagcgcgccagcttctgcagactttgcaggcg
gccgagggtgaggcagcggcggcggccggggccggggcgggcgaagcggcggtgaaagtg
gagggcccgggatccccgggcgtacccgggtcgccccccgaggccgctgccgatccgccc
acgggtctccgcttctcgccggaacaggtggcgtgcgtgtgcgaggcgctgctacaggcg
ggccacgccggccgcttgagccgtttcctgggcgcactgcccccggccgagcgcctacgt
ggcagcgatccggtgctgcgcgctcgggccctggtggccttccagcggggcgagtacgcc
gagctctaccggctgctcgagagccgccccttccccgccgcccaccacgcgtttctgcag
gacctctacctgcgcgcgcgctaccacgaggccgaacgggcccgcggccgcgcgctgggc
gcggtggacaagtaccgtctgcgcaagaagttcccgctgcccaagaccatctgggacggc
gaagagaccgtctactgcttcaaggagcggtcccgcgccgcgctcaaggcctgctatcgc
ggcaaccgctaccccacgccggacgagaagcgccgcctggccacgctcaccggcctctcg
ctcacgcaggttagcaactggttcaagaaccgacgacagcgcgaccggaccgggggaggc
ggcggcgcgccctgcaagagcgaatctgatgggaaccccactacggaggacgagtccagc
cgcagccctgaggacctggagaggggggcggctccagtggcggccgaggcccccgcccag
ggctccatattcctggccggggccgcccctcccgcgccgtgccccgcctcctcctccatc
ctggtgaacgggagcttcctggccgctggcagctctccagcggtgctcctcaatgggagc
cccgtcatcatcaacagcctggccctgggcgaggcctccagcctgggccccctgctgctc
ggcgggggcgggggcgcccctgcaccgcagcccagcccccagggggccagcgagggcaag
acctccctggtcctggaccctcagactggggaggttcgcctggaggaggctcagcctgaa
gcccctgagaccaagggggcccaggtggctgcttcagggccgcctggagaggaggtccca
gggcctctgccccaagtggtgcctggccccccgccggctgccacctttcctctaccccca
ggaccagtgacttccgtggctgctccacaagtggtgccactttccccaccccctggctac
cctgccggcctgggccccacctccccactgttgaacctgccccaggtggtgcccacctcc
caggtggtgaccttgcctcaggctgtggggccactgcagctgttggcagctgggccaggc
agccccgtgaaggtggcagctgccccgggccctgccaacgtgcacctgataaactctggg
gtgggcgtgactgccctgcagctgccttcggccactgccccaggaaacttcctgctggcc
aaccccgtgtctggcagccccattgtgacaggtgtggccgtgcagcagggcaagatcatc
ctcaccgccaccttccccaccagcatgctggtctcccaggtcctgtcgccggcccccagc
ctggccctgcccctgaagccagacgcagccatctcagtccccgaaggagccctcccggtg
gcccccagccccgctctgccggaggcccacgccttaggcgcactgtctgcgcagccgccc
cctgccccggccgccgccagtctgcccttctccccagactcctccggcctcctgcccggc
ttccaggcgcccccgcccgaggggctcctgctgtcgcctgcagcggtgcccatctggcca
gccgggctggaactgagcgccggcactgaggggctgctagaggcagagaaagggctgggg
acgcaggccccccacacggtgctgaggctgccggatcctgaccccgaggggctgctcctg
ggggccacggcggggggcgaggttgacgaggggctggaagtggagaccaaggtcctgacc
cagttacagtcggtgcctgtggaagagcccttggaactgtga
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