Phocoena sinus (vaquita): 116745668
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Entry
116745668 CDS
T07759
Symbol
CLTC
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04142
Lysosome
psiu04144
Endocytosis
psiu04721
Synaptic vesicle cycle
psiu04961
Endocrine and other factor-regulated calcium reabsorption
psiu05016
Huntington disease
psiu05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116745668 (CLTC)
04142 Lysosome
116745668 (CLTC)
09150 Organismal Systems
09155 Excretory system
04961 Endocrine and other factor-regulated calcium reabsorption
116745668 (CLTC)
09156 Nervous system
04721 Synaptic vesicle cycle
116745668 (CLTC)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
116745668 (CLTC)
09164 Neurodegenerative disease
05016 Huntington disease
116745668 (CLTC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
psiu04131
]
116745668 (CLTC)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
psiu04147
]
116745668 (CLTC)
Membrane trafficking [BR:
psiu04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
116745668 (CLTC)
Exosome [BR:
psiu04147
]
Exosomal proteins
Proteins found in most exosomes
116745668 (CLTC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
Coatomer_WDAD
TPR_1
Motif
Other DBs
NCBI-GeneID:
116745668
NCBI-ProteinID:
XP_032472485
Ensembl:
ENSPSNG00000014273
LinkDB
All DBs
Position
20:29552991..29615282
Genome browser
AA seq
1682 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMNDPSN
PIRRPISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA
LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA
MQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN
QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISG
ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAGA
EELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGI
LLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVYL
RANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLRNVMRISPDQGQQFAQMLVQDE
EPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAIL
GNQMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGSLSV
EDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN
FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDR
FDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQF
STDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYY
DSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVL
LESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSE
HRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTS
AVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEV
VQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQ
VGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFAC
VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL
AILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN
HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS
KVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLE
KHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQE
EKRECFGACLFTCYDLLRPDVVLETAWRHNIMDFAMPYFIQVMKEYLTKVDAIKEKVDKL
DASESLRKEEEQATETQPIVYGQPQLMLTAGPSVAVPPQAPFGYGYTAPPYGQPQPGFGY
SM
NT seq
5049 nt
NT seq
+upstream
nt +downstream
nt
atggcccagattctgccaattcgttttcaggagcatcttcagctccaaaacctgggtata
aacccagcaaacatcggcttcagtaccctgactatggagtcagacaaattcatctgcatt
agagagaaagtaggagagcaggcccaggtggtaattattgatatgaatgacccaagtaat
ccaattcgaagaccaatttcagcagacagcgccatcatgaatccagccagcaaagtaatt
gcactaaaagctgggaaaactcttcagatatttaacattgaaatgaaaagtaaaatgaag
gcccataccatgaccgatgatgtcaccttctggaaatggatctctttgaatacggttgct
cttgttacggataatgcagtttatcattggagtatggaaggagagtctcagccggtgaaa
atgtttgatcgccattctagccttgcagggtgccagattatcaattatcgtactgatgca
aagcaaaagtggttacttctgactggcatatctgcacagcaaaatcgtgtggtaggagct
atgcagttatattctgtagataggaaagtgtctcaacccattgaaggacatgcggctagc
ttcgcacagtttaagatggaaggaaatgcagaagaatcgacgttattttgttttgcagta
cggggtcaagctggagggaagttacatatcattgaagttggcacaccacctacagggaac
caaccctttccaaagaaggcagtggatgttttctttcctccagaagcacaaaatgacttt
cctgttgcaatgcagatcagtgaaaagcatgatgtagtattcttgattactaagtatggt
tatatccacctgtatgatcttgagactggtacctgcatctacatgaatagaatcagtgga
gaaacaatctttgtcactgcacctcatgaagccacagctggaataattggagtaaacaga
aagggacaagttctctcagtatgtgtggaagaagaaaacataattccttatatcaccaat
gtcctacaaaatcctgatttggccctgagaatggctgtacgtaacaacttggctggtgct
gaagaactctttgcccggaagtttaatgctctttttgcccagggaaattactcagaggca
gcaaaggtggctgctaatgcaccaaagggaatccttcgtaccccagacaccatccgtcgg
ttccagagtgttccagctcagccaggtcaaacttctcccctacttcagtactttggaatc
cttttggaccagggccagctaaacaaatatgaatccttagaactgtgtaggcctgtactt
cagcaagggcggaaacagcttttggagaaatggttaaaagaagataagctggaatgctct
gaagaactgggagaccttgtgaaatctgtggaccctacattggcacttagtgtgtaccta
agggctaatgtgccaaataaagtcattcagtgctttgcagaaacaggtcaagtccagaag
attgttttatatgctaaaaaagttggatatactccagactggatctttctgctgagaaat
gttatgcgaatcagtccagatcaggggcagcagtttgctcaaatgttagttcaggatgaa
gaacctcttgctgatatcacacagattgtcgatgtgtttatggaatacaatctaattcag
cagtgtactgcattcttgcttgatgcactgaagaataatcgcccatctgaaggtccttta
cagacaaggttgcttgagatgaaccttatgcatgcacctcaagtcgcagatgctattcta
gggaatcagatgttcacgcattatgaccgggctcatatcgctcagctgtgtgagaaggcg
ggcctcctgcagcgtgctttagaacacttcactgacttatatgatataaagcgtgcggtt
gttcatacccatcttcttaaccctgagtggttagtgaattactttgggtccttatcagta
gaagactccctggaatgcctcagagccatgctatctgccaatattcgtcagaatctacag
atctgtgtgcaagtggcttctaagtatcacgaacaactgtccactcagtctctgattgaa
ctttttgaatctttcaagagttttgaaggtcttttttattttctgggatccattgttaac
tttagtcaggacccagatgtgcactttaaatatattcaggcagcttgcaagacagggcag
atcaaagaagtagaaagaatctgcagagaaagcaactgctatgatcctgagcgagtcaag
aattttctcaaggaagcaaagctaacagatcagttaccacttatcattgtgtgtgatcga
tttgactttgtccatgatttggtgctctatttatatagaaataatcttcaaaagtatata
gagatatatgtacagaaggtgaatccaagtcgacttcctgtggttattggaggattactt
gatgttgattgctctgaagatgtcattaaaaacttgattcttgttgtaagaggtcaattc
tctactgatgagcttgttgctgaggttgaaaaaaggaacagattgaaactgcttctgcct
tggctggaggctagaattcatgagggctgtgaagagcctgctactcacaatgctttagcc
aaaatctacatagacagtaataacaacccagagcgatttcttcgggaaaatccttattat
gacagtcgtgttgttggaaagtattgtgagaagagagatccacatctagcctgtgttgct
tatgaacgtggccagtgtgatctggaacttattaatgtttgcaatgagaattccctcttc
aaaagtctttcccgctatctggtacggcgaaaggatccagaactgtggggtagtgtgctg
ctggaaagcaatccttacaggagacctctcattgatcaggttgtacagacagccttgtct
gagactcaggaccctgaagaagtgtcagtaactgtcaaggcttttatgactgcagacctt
cctaatgaactcattgaactgctggagaaaattgtccttgataactctgtattcagtgaa
cacaggaatctgcaaaacctcctcatcctcactgcaatcaaggctgaccgtacccgtgtt
atggaatatattaaccgcctggataattatgatgccccagatattgccaatatcgccatc
agcaatgagctgtttgaagaagcatttgccatttttcggaaatttgacgtcaatacttca
gcagtgcaggtcttgatcgaacatattggaaacttagatcgggcatatgaatttgctgaa
cgctgcaatgaacctgcagtctggagtcagcttgcaaaagcccagctacagaaaggaatg
gtgaaagaagccattgattcttacatcaaagcagatgatccttcatcctacatggaagtt
gttcaggctgccaatactagtggaaactgggaagaactggtgaagtacttgcagatggcc
cgtaagaaggctcgtgaatcctatgtggagacagaattgatatttgcactggctaaaaca
aaccgccttgcagagttagaagagttcatcaatggaccaaataacgctcatatccagcaa
gttggtgaccgctgttatgatgaaaaaatgtatgatgctgctaagttgttgtacaataat
gtttccaattttgggcgcttggcatctactctggttcacctgggtgaatatcaggcagct
gttgatggagctaggaaagctaacagtactcgaacatggaaagaggtctgctttgcctgt
gtagatgggaaagagttccgtctcgctcaaatgtgtgggcttcatattgtagtacatgca
gatgaattggaggaacttatcaactactatcaggatcgtggatattttgaagagctgata
accatgttggaagcagcactgggactggagcgagctcatatgggaatgttcaccgaatta
gctattctgtattctaagtttaagccacagaaaatgagggagcacctggagctgttctgg
tccagagtgaacattcctaaggtgctaagagctgcagaacaagctcatctttgggcagaa
ttggtgtttttgtatgacaagtacgaagaatatgataatgccataattaccatgatgaat
catccgactgatgcgtggaaagaagggcagttcaaagatatcattaccaaggttgccaat
gtggaactatactacagagcaatacaattctacttagaattcaagccactgttgttaaat
gatttgctgatggtgctgtctccacggttggatcatactcgtgcagtcaattatttcagc
aaggttaaacagctaccactggtgaaaccatatttacgttcagtccagaaccacaacaac
aaatctgtgaatgaatcactgaacaacctctttattacagaagaagattatcaggctctg
cgaacatcgatagatgcttatgacaactttgacaatatctcgcttgctcagcgtttggaa
aaacatgaactcattgagttcagaagaattgctgcttatctcttcaaaggcaacaatcgc
tggaaacagagtgtggagctgtgcaagaaagatagcctgtacaaggatgcaatgcagtat
gcctctgaatctaaagatactgagttggctgaagaactcctacagtggtttttgcaggaa
gaaaaaagagagtgctttggagcttgtctctttacttgttatgatcttttaaggccagat
gttgtcctggaaactgcatggaggcacaatatcatggattttgccatgccctatttcatc
caggtcatgaaggaatacctgacaaaggttgatgcaataaaggaaaaggtggataaatta
gatgcttcagaatcactgagaaaagaagaagaacaagctacagagactcaacctattgtt
tatggtcagccccagttgatgctgacagcaggacccagtgttgcagtccctccccaggca
ccttttggttatggttatactgcaccaccctatgggcagccacagcctggctttgggtac
agcatgtga
DBGET
integrated database retrieval system
