Phocoena sinus (vaquita): 116746395
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Entry
116746395 CDS
T07759
Symbol
SOX9
Name
(RefSeq) transcription factor SOX-9
KO
K18435
transcription factor SOX9 (SOX group E)
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04024
cAMP signaling pathway
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04024 cAMP signaling pathway
116746395 (SOX9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psiu03000
]
116746395 (SOX9)
Transcription factors [BR:
psiu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
116746395 (SOX9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
116746395
NCBI-ProteinID:
XP_032473769
Ensembl:
ENSPSNG00000021947
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All DBs
Position
20:complement(54248489..54253962)
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AA seq
509 aa
AA seq
DB search
MNLLDPFMKMTDEQEKGLSGAPSPSMSEDSAGSPCPSGSGSDTENTRPQENTFPKGEPDL
KKESEEDKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAAR
RKLADQYPHLHNAELSKTLGKLWRLLNESEKRPFVEEAERLRVQHKKDHPDYKYQPRRRK
SVKNGQAEAEEATEQTHISPNAIFKALQADSPHSSSGMSEVHSPGEHSGQSQGPPTPPTT
PKTDVQPGKADLKREGRPLPEGGRQPPIDFRDVDIGELSSDVISNIETFDVNEFDQYLPP
NGHPGVPATHGQVTYTGSYGISSTAATPAGASHVWMSKQQAPPPPPQAPPPAPPAPPQPP
AQAPPQPSAQAPPQPPAQAHTLTTLSSEPGQAPRTHIKTEQLSPSHYSEQQQRSPQQIAY
SPFSLPHYSPSYPPVTRSQYDYTDHQNSGSYYSHAAGQGSGLYSTFSYMNPAQRPMYTPI
ADTSGVPSIPQTHSPQHWEQPVYTQLTRP
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaatctcctggaccccttcatgaagatgaccgacgagcaggagaagggcctgtccggc
gcccccagcccctccatgtccgaggactcggcgggctcgccctgcccttcgggctccggc
tctgacaccgagaacacgcggccccaggagaacacgttccccaagggcgagccggacctg
aagaaggagagcgaagaggacaagttccccgtgtgcatccgcgaggccgtcagccaggtg
ctcaagggctacgactggacgctggtacccatgccggtgcgcgtcaacggctcgagcaag
aacaagccgcacgtcaagcggcccatgaacgccttcatggtgtgggcgcaggcggcgcgc
aggaagctcgccgaccagtacccacacctgcacaacgccgagctcagcaagacgctgggc
aaactctggagacttctgaatgagagcgagaagcggcccttcgtggaggaggcggagcgg
ctgcgcgtgcagcacaagaaggaccacccggattacaagtaccagccgcggcggaggaag
tcggtgaagaacggccaggcggaggccgaggaggccacggagcagacgcacatctcccct
aacgccatcttcaaggcgctgcaggccgactcgccgcactcctcctccggcatgagcgag
gtccattcccccggagagcactccgggcaatcgcagggtccaccgacgccaccgaccacc
cccaaaaccgacgtgcagccgggcaaggctgacctgaagcgagaggggcgcccgctgcca
gaggggggcagacagccccccatcgacttccgcgacgtggacatcggcgagctgagcagc
gacgtcatctccaacatcgagaccttcgacgtgaacgagttcgaccagtacctgccgccc
aatggccacccgggggtgccggccacgcacggccaggtcacctacacgggcagctacggc
atcagcagcacagccgccaccccggcgggcgctagccacgtgtggatgtccaagcagcag
gcgccgccgccgcccccgcaggcgcccccgccggccccgccggcgcccccgcagccgccc
gcgcaggcgcccccccagccgtccgcgcaggcgcccccgcagccgccggcgcaggcgcac
acgctgaccacgctgagcagcgagccgggccaggccccgcgaacgcacatcaagacggag
cagctgagtcccagccactacagcgagcagcagcagcgctcgccgcagcagatcgcctac
agccccttcagcctcccgcactacagcccgtcctacccgcccgtcacccgctcgcagtac
gactacactgaccaccagaactccggctcctactacagccatgcggcgggccagggctcc
ggcctctactccaccttcagctacatgaacccggcgcagcggcccatgtacacccccatc
gccgacacctccggggtcccttccatcccgcagacccacagcccccagcactgggaacag
cccgtctacacacagctcaccagaccttga
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