Phocoena sinus (vaquita): 116749097
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Entry
116749097 CDS
T07759
Symbol
HCN4
Name
(RefSeq) LOW QUALITY PROTEIN: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4
KO
K04957
hyperpolarization activated cyclic nucleotide-gated potassium channel 4
Organism
psiu
Phocoena sinus (vaquita)
Pathway
psiu04024
cAMP signaling pathway
psiu04742
Taste transduction
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04024 cAMP signaling pathway
116749097 (HCN4)
09150 Organismal Systems
09157 Sensory system
04742 Taste transduction
116749097 (HCN4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
psiu04040
]
116749097 (HCN4)
Ion channels [BR:
psiu04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (HCN)
116749097 (HCN4)
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ion_trans_N
cNMP_binding
Ion_trans_2
LPD1
Motif
Other DBs
NCBI-GeneID:
116749097
NCBI-ProteinID:
XP_032478967
Ensembl:
ENSPSNG00000003472
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All DBs
Position
2:62638836..62680338
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AA seq
1201 aa
AA seq
DB search
MDKLPPSMRKRLYSLPQQVGAKAWIMDEEEDAEEEGAGGRQDPSRRSIRLRPLPSPSPSA
AAGGTEPRGAALGAADSEGSTRGAGKSSTNGDCRRFRGSLASLGSRGGGGAGAGGGSSHG
HLHDSAEERRLIAEGDASPGEDRTPPGLAAETERSGASAQPAASPPPPQQPPQPVPASCE
QPSVDTAIKVEGGAAAGDQILPEAEVRLGQAGFMQRQFGAMLQPGVNKFSLRMFGSQKAV
EREQERVKSAGFWIIHPYSDFRFYWDLTMLLLMVGNLIIIPVGITFFKDENTTPWIVFNV
VSDTFFLIDLVLNFRTGXVVEDNTEIILDPQRIKMKYLKSWFVVDFISSIPVDYIFLIVE
TRIDSEVYKTARALRIVRFTXILSLLRLLRLSRLIRYIHQWEEIFHMTYDLASAVVRIVN
LIGMMLLLCHWDGCLQFLVPMLQDFPDDCWVSINNMVNNSWGKQYSYALFKAMSHMLCIG
YGRQAPVGMSDVWLTMLSMIVGATCYAMFIGHATALIQSLDSSRRQYQEKYKQVEQYMSF
HKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEIINFNCRKLVASMPLFANAD
PNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNKETKLADGSYFGE
ICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVALDRLDRIGKKNSI
LLHKVQHDLNSGVFNYQENEIIQQIVQHDREMAHCAHRVQAAASATPTPTPVIWTPLIQA
PLQAAAATTSVAIALTHHPRLPAAIFRPPPGPGLGGLGAGQTPRHLKRLQSLIPSALGSA
SPASSPSQVDTPSSSSFHIQQLAGFSAPAGLSPLLPSSSSSPPPGVGSSSSAPTPSAAAA
VAAATAGFGHFHKALGGSLSSSDSPLLTPLQPGARSPQANQPAPPLPGARGGLGLAEHFL
PPPASARSPSSSPGQLGQPPGELSPGLATGPPSTPETPPRQPERLSFAAGASGGASPVAF
TPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPGRL
TQDLKLISASQPALPQDGAQTLRRASPHSSGESVAAFQLFPRGGGGSGGSGGLGLPGRPY
GAVPGQHVTLPRKTSSGSLPPPISLFGARATSSGGPPLTAAPQREPGARSEPVRSKLPSN
L
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggacaagctgccgccgtccatgcgcaagagactctacagccttccgcagcaggtgggg
gccaaggcgtggatcatggacgaagaagaggacgccgaggaggagggggctgggggccgc
caggaccccagccgcaggagcatccggctgcggccgctgccttcgccctcgccctcggcg
gccgcgggcggcacggagccccggggtgcggccctcggggcggcagacagcgaggggtcg
acccgcggcgcgggcaagtctagcactaacggcgactgcaggcgcttccgcgggagcctg
gcatcgctgggcagccggggcggcggcggcgccggagcggggggcggcagcagtcacggg
cacctgcatgactccgcggaggagcggcggctcatcgccgagggcgacgcgtcccccggt
gaggacaggacgcccccgggcctggcggccgagaccgagcgctctggcgcctcggcacag
cccgcagcctcgccgccgccgccccagcagccgccgcagccggtccccgcctcctgcgag
cagccctcggtggacaccgcgatcaaagtggagggaggtgcggccgccggcgaccagatc
ctccctgaggccgaggtgcgcctgggccaggccggcttcatgcagcgccagttcggggcc
atgctccagcccggggtcaacaaattctccctgaggatgttcggcagccagaaggcggtg
gagcgcgagcaggagagggttaagtcggccgggttttggattatccacccctacagcgac
ttcagattttactgggacctgaccatgttgctgctgatggtaggaaacctgatcatcatt
cctgtgggcatcaccttcttcaaggatgagaacaccacaccatggattgtcttcaacgtg
gtgtcggacacgttcttcctcatcgacttggtcctcaacttccgcacagganttgtggtg
gaggacaacacagagatcatcctggacccacagcggattaagatgaagtacctcaaaagc
tggttcgtggtggatttcatctcctccatccccgtggactacatcttcctcattgtggag
acacgcatcgattcggaggtctacaagactgcccgggccctgcgcatcgtccgtttcacc
nagatcctcagcctcctgcgcctcttgcgtctctcccgcctcattcgatatattcaccag
tgggaagagatcttccacatgacctacgacctggccagcgccgtggtgcgcatcgtgaac
ctcatcggcatgatgctgctgctctgccactgggacggctgcctgcagttcctggtgccc
atgctgcaggacttccctgacgactgctgggtgtccatcaacaacatggtgaacaactca
tggggaaagcagtactcctacgccctcttcaaggccatgagccacatgctgtgcatcggg
tacggccggcaggccccggtgggcatgtcagacgtctggctcaccatgctcagcatgatc
gtgggggccacctgctacgccatgttcatcggccacgccaccgccctcatccagtctctg
gactcctcccggcgccagtaccaggagaagtacaagcaggtggagcagtacatgtccttc
cacaagctcccgcccgacacccggcagcgcatccatgactactacgagcaccgctaccag
ggcaagatgttcgacgaggagagcatcctgggcgagctgagcgagccgctgcgggaggag
atcatcaactttaactgccgaaagctggtggcctccatgccgctgtttgccaacgcggac
cccaactttgtgacctccatgctgaccaagctgcgcttcgaggtcttccagccgggggac
tacatcatccgtgaaggcaccatcggcaagaagatgtatttcatccagcacggggtggtc
agcgtgctcaccaagggcaacaaggagaccaagctggcggatggctcctactttggagag
atctgcctgctgacgcggggccggcgcacagccagcgtgagggctgacacctactgccgc
ctctactcgctgagcgtggacaacttcaacgaggtcctggaggagtaccccatgatgcgg
cgggccttcgagacggtggcgctggaccgcctggaccgcatcggcaagaagaattccatc
cttctccacaaagtccagcacgacctcaactcaggcgtcttcaactaccaggagaacgag
atcatccagcagatcgtacagcacgaccgggagatggcgcactgcgcccaccgcgtccag
gccgccgcctctgccactccgacccccacgcccgtcatctggaccccgctgatccaggcg
ccgctgcaggccgccgccgccaccacttccgtggccatcgcgctcacccaccacccgcgc
ctgcccgccgccatcttccggcctcccccggggcccgggctgggcggcctcggggcaggg
cagacgccccggcacctgaagcggctgcagtccctgatcccgtcggcgctgggttccgcc
tcgcccgccagcagcccgtcgcaggtggacacgccgtcttcctcctccttccacatccaa
cagctggctggattctctgcacccgccggactgagcccgctccttccctcgtccagctct
tccccgccgcctggggtgggcagctcctcctccgcacccacgccatctgctgcggcggcc
gtggccgccgccacagccgggttcggccacttccacaaggcgctgggaggctccctgtcc
tcctcggactctcccctgctcaccccgctgcagccgggcgcccgctccccacaggccaac
cagccggcgcccccgctgcccggggcccggggcggcctgggactggcggagcacttcctg
ccacccccagcctcggccaggtccccgtcgtccagccccgggcagctgggccagcctccc
ggggagctgtccccgggtctggccaccggcccaccaagtacgccagagacacccccgcgg
cagcctgagcggctgtcctttgcggcaggggcctcagggggggcctctcctgtagccttt
accccccgaggaggtctcagcccccccggccacagcccaggccctccaagaactttccca
agtgcccctccccgggcatccggctcccacggttccttgctcctgcctccggcatccagc
cccccgccaccccaagtcccccagcgccggggcaccccgcccctcaccccgggccgcctc
acccaggacctcaagctcatctcagcctctcagccggccctaccccaggacggggcacag
actctccgcagagcctccccacactcctctggggagtccgtggctgccttccaactcttt
cccagaggcgggggcggcagcgggggcagcgggggcctcggtctccccgggaggccctat
ggtgccgtccctggccagcacgtcactctgcctcggaagacatcctcaggttctttgcca
ccccctatttctttatttggggcaagagccacctcttctgggggtccccctctgactgct
gctccccagagggaacctggggccaggtctgagccagtgcgctctaaactgccctccaat
ctatga
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