Phocoena sinus (vaquita): 116763473
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Entry
116763473 CDS
T07759
Symbol
SCAF8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
psiu
Phocoena sinus (vaquita)
Brite
KEGG Orthology (KO) [BR:
psiu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psiu03021
]
116763473 (SCAF8)
03041 Spliceosome [BR:
psiu03041
]
116763473 (SCAF8)
Transcription machinery [BR:
psiu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
116763473 (SCAF8)
Spliceosome [BR:
psiu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
116763473 (SCAF8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
DAXX_hist_bd
Motif
Other DBs
NCBI-GeneID:
116763473
NCBI-ProteinID:
XP_032507125
Ensembl:
ENSPSNG00000021822
LinkDB
All DBs
Position
12:complement(12009699..12207890)
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AA seq
1270 aa
AA seq
DB search
MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKN
NVFKSEIIQPLLDMAAGIPPPVVTPVLASTTAAMSNTPGTPVTPVTPANVVQGLPDPWVS
QITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQL
TAAAAAASTLNPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPASQLSHVSESVNNSIF
HQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSVSPSQGSSQQHFLEPEA
NLDDSIDIQQQDMDIDEGQDGVEEEIFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRS
GSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLW
VGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIG
SKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWE
SVKSSEPVKETVQTTQSPPPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSLVPPAFP
VSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPPL
SMTPETVKDVGFGSLVLPGGSVASSLATSTLPAGSVFNPPTKQAEPEEKVPHLIDHQISS
GENTRSVIPNDVSGGSAILGGQPPNVTNNSGILGVQRPNVSSNNEILGVRPSNVSNSSGI
IGAQPPNILNNSGILGIQPPSVSSSSGLLGMLPPNIPNNSGLMGVQPPSVPNTSGLLGTQ
PPAGPQNLPPLNLSNQRMPAMPMLDIRPGLIPQTPGPRFPLMQPGIPPQRGLPPPAVLDS
ALHPPPRGPFAPGDIFSPPERPFLVPGRQSVDNVANPEKRIPLGNDNIQQEGDRDYRFPP
IETRETISRPPPVDVRDVVGRPVDPREGPGRPPLDGRDHFGRPPVDIRENLVRPGIDHLG
RRDHFGFTPEKPWGHRDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSGPWNRGF
GQEVHRDFDDRRRPWERQRDRDDRDFDFCREINGSRFGRDRIQNTWVPPPHARVFDFFEG
ATSQRKGDNVPQVNGENTERHAQPPPLPAQSDPELYEKLSSSSEISKEKSDTVADIESEP
VVESTETEGT
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtgaaaaccttcaatagcgagttgtattccctgaatgactacaagccaccc
atttctaaagcgaaaatgacccaaattactaaagcagccatcaaagctattaagttttat
aaacatgtggtacagagtgttgagaaattcattcagaaatgtaaaccagaatacaaggta
cctggactttatgttattgactctattgtacgacaatctcgacatcagtttggtcaagaa
aaggatgtgttcgcacccagatttagtaataacatcattagcactttccagaatttatat
cgttgccctggagacgacaagagtaaaatagtgagagtattaaacttgtggcagaagaat
aatgtatttaaaagtgagattattcaacctcttttggatatggcagcagggattcctcct
ccagttgtcacacctgttttggccagtactactgctgctatgagcaataccccaggaact
cctgtgacacctgttactccagccaatgtggtccaaggtttacctgatccgtgggtgtct
cagataacaaatacagatacacttgcagctgtagctcagatcttacaaagtcctcaaggc
caacagcttcagcagttaatacagactttacagatacagcagcagaagcctcagccttcc
atcttgcaagccctggatgccggccttgtggtccagcttcaggctcttacagcacagctc
acagcagcggctgcagcagccagcacccttaatcccctagaacagggagtgtcttttaac
aagaagttgatggataggtttgattttggggaagattctgagcatagtgaagaacccaaa
aaggaaattccagcttctcaactttctcatgtttcagaatctgtgaacaattccatcttt
catcagatagcagaacagctacagcagcaaaatcttgaacatctcagacagcaactcctg
gaacagcaacagcctcaaaaggcaactcctcaggatagtcaagaaggaacatttgggtca
gagcattccgtgtcaccatcacaagggagcagtcaacagcatttccttgaacctgaagca
aatttggatgattccatagatattcagcagcaggatatggatatagatgaagggcaagat
ggagtagaagaggagatctttgaacaggaagcaaagaaagtggctgttcgctcaagatca
agaacgcattcacgatctcgttcaagatcaccaagaaaacgaagatctaggtcacgatct
ggttctcgaaagcgtaaacacagaaagcgatcacgctctcgctctagagaaagaaaaagg
aaatcatcacgttcatactcaagtgaaagaagagctagagaaagggagaaagaacgacag
aagaagggattgcctccaattagatctaaaacattaagtgtatgtagtactactctgtgg
gttggtcaggtagacaagaaggcaacacagcaagatttaaccaacctgtttgaagagttt
ggacagattgaatccattaatatgattcctcccaggggctgtgcttatgtctgcatggtt
catcgacaagatgcatttcgggctcttcagaaacttagttccgggtcatataaaattggg
tccaaggtcattaagattgcttgggctttaaacaaaggtgtgaaaacagaatacaaacaa
ttctgggatgtggatcttggagtaacatatataccatgggaaaaagttaaagtggatgac
ttggaaggttttgcagaaggaggcatgattgatcaggaaactgtaaatactgagtgggaa
agtgtgaaaagctcagaacccgttaaagagacggtccagacaactcagagcccacctcca
gttgaaaaggagacagtggtcacaacccaggcagaggttttccctccacctgttgctatg
ttacagattccagtagctccagcagtgcctacagttagtttagtcccaccagcatttcct
gtgtcaatgccagttcctcctcctggattcagtccaattcctccaccgccttttctccgc
gcaagttttaacccttcacaaccacctcctggtttcatgccacctccagttccaccacct
gttgtaccaccacctactattccaccagtagtaccaacatctttagtgcagccgccatta
tctatgactccagaaactgtgaaagatgttggatttggtagccttgttttgccaggtggt
tctgttgccagcagtcttgctacttccactctgccagctggaagtgtttttaatcctcca
actaaacaagcagagcctgaagaaaaagtacctcatcttatagaccaccagatttcttct
ggtgaaaacaccagatcagtgattccaaatgatgtttcaggtggctctgcgattttagga
ggacagccgccaaatgtgacgaacaattctggaattctgggagtccaaagaccaaatgta
tcaagtaataatgaaattcttggagtccggccatctaatgtttccaatagttctgggatt
attggagcccagccaccaaatattctaaataactctggaattttgggaatacagccacca
agtgtgtcaagtagttctggacttctgggcatgctacccccaaatatacctaacaattcc
ggacttatgggagtacagccacccagtgttccaaatacttctggacttttgggaacacag
ccaccagctgggcctcaaaatttaccccctttaaatctttctaatcaaaggatgcctgca
atgccaatgttagacattcgtccaggactaataccacagacacctggaccaagattccct
ttaatgcagcctggaattccacctcagcggggactccctcccccagcggtgcttgattca
gctcttcatccaccaccccgtggtccttttgctccaggagatatttttagtccacctgaa
agaccttttctagttcctggaagacaaagtgtagacaatgttgctaatccagaaaaaagg
ataccacttgggaatgataacattcaacaggaaggagatagagattaccggtttcctccc
atagaaaccagggaaaccattagtagacctcccccggtggatgttagggatgtggttgga
cggcctgtagatccaagagaaggtcctggaaggcctccattagacggtagagatcatttt
ggacgacctcctgtagatattagagagaatcttgtgaggccaggcatagatcatcttggt
cgaagagaccactttggctttactccagagaagccctgggggcatagagattttgacgag
agagagcatcgggttctgcctgtctatggtggtccaaaaggcttacatgaagaaagaggt
agatttcggtctggaaactatcggtttgatcctagaagtggtccttggaacagaggattt
ggacaagaagttcacagagattttgatgaccgcagaagaccctgggagaggcaaagggat
agggatgacagagattttgatttctgcagagaaattaatggaagtcgttttggacgagat
agaattcaaaacacctgggtcccccctcctcatgctcgggtttttgatttttttgaaggg
gccacttctcaacggaaaggtgataatgtgcctcaggttaatggtgaaaataccgagaga
catgctcagccaccacctctaccagcgcagagtgatcctgaactttatgaaaaactgtca
tcttcaagtgaaataagcaaggagaagagtgacacagttgctgatatagagagtgaacca
gtggtagaaagcacagaaactgaggggacataa
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integrated database retrieval system
