Stutzerimonas stutzeri DSM 10701: PSJM300_09695
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Entry
PSJM300_09695 CDS
T02182
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSJM300_09695 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psj03400
]
PSJM300_09695 (ligD)
Enzymes [BR:
psj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSJM300_09695 (ligD)
DNA repair and recombination proteins [BR:
psj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSJM300_09695 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Myosin_N
Tudor_3
Motif
Other DBs
NCBI-ProteinID:
AFN78005
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Position
2100853..2103375
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AA seq
840 aa
AA seq
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MALDEYNRKRDFSATPEPGGTPAGRRGKQAALQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPKARRLAVHVEDHPLEYATFEGSIPEGHYGAGDVIVWDRGVWVPQGDPEEGY
RKGKLKFALEGEKLSGSWNLVRTRMDGNKEQWFLIKSNDETARPEGEYDIVREQPDSVLS
DRTLIPRQRGKAKAEAAAKPAKTPARRRSRKADEPATTLSGARPAPLPESLKPQLATLVE
SVPDGDWRYEIKFDGYRILARIESGEVRLFTRNGHDWTAKMPQQAKALAALGLESAWLDG
EVVVPNEEGTPDFQALQNAFEAGRSGRIVFYLFDLPYLNGMDLREVPLEERRTALRQVLE
AVPSDLLRFSADFTEQPDSILESACQMKLEGLIGKRAGSSYVSRRSSSWVKIKCKNRQEF
VIVGFTDPKGARSGFGALLLGLHDEQGELRYAGKVGTGFNQATLKSLHAKLEPLVVKRCP
LDKPPPAAEVRGAHWLKPELICEVAYAEMTRQGVVRHSVFHGLRADKPARAITHERPVST
PAKKSDAIRISNPERIIDQSIGATKMELARFYAEIAPWALPHLRHRPLALVRAPEGIEGE
LFFQKHTEKLSIPHITQLDRALYPEHAALMTIDSVEALIGAAQMGTIELHTWNALAPELD
HPDRFVLDLDPDPALPWKRMVEATQLTQTLLDEIGLQSFLKTSGGKGLHILVPLQPVHDW
SEVKGFSQAIARYLAKLLPQHFSAVSGPKNRIGRIFIDYLRNSQGASTVAAYSVRAREGL
PVSVPIHRDELAELKGANLWNIRNLMLRLEEQGDDDPWSGIDQTGQRITADMRERLGLKP
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggccctggatgagtacaaccgcaagcgcgacttcagcgcgacccccgagcccggcggc
acacccgcaggcaggcgcggcaagcaggcggcgctgcagtactgcatccagaagcacgac
gccacgcgcttgcattacgacttccgcctggagctggacggcaccctgaaaagctgggcg
attcccaaggggccgtcgctcgaccccaaggccaggcgcctggcggtgcacgttgaggat
catccgctcgaatacgccaccttcgagggcagcattcccgaagggcactatggtgccggt
gatgtgatcgtctgggatcgcggcgtgtgggtaccgcagggcgaccctgaggagggctat
cgcaagggcaaactgaagtttgcgctcgagggggaaaagctctcaggaagctggaacctg
gtgcgcacgcggatggacggcaacaaggaacagtggttcctgatcaaatccaacgacgag
acggcgcggccggaaggcgagtacgacatcgtccgcgagcagccggacagcgtgctcagc
gatcgcaccctgatccctcgccagcgtggcaaggcgaaggccgaagccgcagccaagccg
gcgaagacacctgcgcggcgccgcagtcgcaaggcagacgaacctgccaccacgctttcc
ggcgctcgcccggcgccgctgccggaaagcctgaagccgcagctggcgacgctggtcgag
tcggtgcccgatggcgactggcgctatgagatcaaattcgacggctaccgcatcctggcg
cgaatcgagtcgggcgaggtgcggctgttcacccgcaacggccatgactggacggcgaag
atgccgcagcaggcaaaggcgctggcggcgctggggctggaatccgcctggctcgacggc
gaagtggtggtgcccaacgaggagggcacgccggatttccaggcgttgcagaatgccttc
gaagccggccgcagcggccgcatcgttttctacctgttcgacctgccttatctgaacggc
atggacctgcgcgaagtgccgctcgaagagcgtcggacggcgctgcgtcaggttctggaa
gccgtgccgagcgatttgctgcgcttctccgccgacttcaccgaacaaccggacagcatc
ctggagagcgcctgccagatgaagctcgaagggctgatcggcaagcgcgccggcagcagc
tacgtctccaggcgcagcagcagttgggtgaagatcaaatgcaagaaccggcaggagttc
gtcatcgtcggcttcaccgaccccaagggggcgaggagcgggttcggtgcattgctgctc
ggcctgcacgatgaacagggcgaactgcgttacgccggcaaggtcggcaccggtttcaac
caggccacgctgaaaagcctgcacgccaagctcgaaccgctggtggtgaagcgttgcccg
ctggacaagcctccgccggcggcagaagtgcgcggcgcgcactggctcaaacccgagctg
atctgtgaagtggcctatgcggagatgacccgccagggcgtggtgcgccattcggttttt
cacggcctgcgcgcggacaaaccggccagggcgatcactcacgaacgccccgtcagcacg
ccggcgaagaagagtgatgccatccgaatttccaatccggagcgaatcatcgaccagtcg
atcggcgccaccaagatggaactggcgcgcttctatgccgaaatcgcaccctgggcattg
ccccacctgcgccataggcccctggcgctggtgcgcgccccggaaggtatcgaaggcgag
ctgttcttccagaaacacacggagaaactgagcattccgcacatcacccagctggaccgc
gcgctctatccggaacacgcggcgctgatgaccatcgacagcgtcgaggcgctgatcggt
gcggcgcagatgggcaccatcgagttgcacacctggaatgcgttggcgccggagctcgat
cacccggaccgcttcgtcctggatctcgaccccgatccggccttgccgtggaagcgcatg
gtcgaggcgacccagttgacccagaccctgctggacgaaatcggcctgcaatccttcctg
aaaaccagcggcggcaagggtttgcatattctggtgccgctgcagcccgtccatgactgg
agcgaggtgaagggtttcagccaggccattgcgcgctacctggcgaaactcttgccgcag
cacttctcggcggtcagcgggccgaagaatcgtatcggccggatcttcatcgattacctg
cgcaacagccagggtgccagcaccgtggcggcctattcggtacgggcgcgcgaagggctc
ccggtgtcggtgcccatccaccgtgacgaactggcggaactgaagggcgccaatctctgg
aacatccgcaacctgatgctccggctggaagagcagggcgatgacgatccctggtcgggc
atcgaccagaccgggcaaaggatcaccgcggacatgcgcgaacgcctgggtttgaaaccc
taa
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