Stutzerimonas stutzeri DSM 10701: PSJM300_16965
Help
Entry
PSJM300_16965 CDS
T02182
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
psj
Stutzerimonas stutzeri DSM 10701
Pathway
psj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSJM300_16965 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psj03021
]
PSJM300_16965 (rpoB)
03400 DNA repair and recombination proteins [BR:
psj03400
]
PSJM300_16965 (rpoB)
Enzymes [BR:
psj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSJM300_16965 (rpoB)
Transcription machinery [BR:
psj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSJM300_16965 (rpoB)
DNA repair and recombination proteins [BR:
psj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSJM300_16965 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AFN79450
LinkDB
All DBs
Position
complement(3679922..3683992)
Genome browser
AA seq
1356 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPHVMDVPYLLAIQLDSYREFLQAGATKDQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSSKAIKD
IKEQEVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALNYSTEEILDAFYDTNVFHVKGEM
LALELVPQRLRGEIASFDITDGSGKLIVEQGRRITARHINQLDKSGVKELEMPMDYVLGR
TVAKAIVHPATGEIIAECNTELTVEVLAKIVKAQVVRFETLYTNDIDCGPFISDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFASERYDLSAVGRMKFNRRIGREEIE
GPGVLSREDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGEVTDEIVFLSAIEEADHVIAQASAKLEGRKLVDELVAVRHLNEFTVKAPEDVTLMDVS
PKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGMERNVARDSGVCV
VARRGGVIDSVDASRVVVRVHDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGDV
VQRGDIMADGPSTDMGELALGQNMRVAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQEL
TCVSRDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQLT
PEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFIRDGVERDSRALAIEKMQLDEI
RKDLNEEFRIVEGATFERLRSALVGATAEGGAGLKKGAVITDETLDGLEHGQWFKLRMAE
DALNEQLEKAQAYLSDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIKRRIQPGD
KMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKGL
GEKINLMLEEQRKVADLRKFLHEIYNEIGGRQESLDDLNDQEVLDLANNLRKGVPMATPV
FDGAKEREIKAMLKLADLPESGQMQLFDGRTGNKFERTTTVGYMYMLKLNHLVDDKMHAR
STGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYK
NIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4071 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatacactgagaaaaaacgaatccgcaaggactttagcaagttaccgcac
gtgatggacgtgccgtatcttttggccatccagctggattcgtaccgcgaattcctgcag
gcgggagcgacaaaggatcagttccgcgatattggcttgcatgcagccttcaaatccgtt
tttccgattatcagctattccggcaatgcagcgctggagtacgtcggctaccgccttggt
gagccggctttcgatgtcaaggagtgcgtgctgcgcggcgtgaccttcgcggttccgctg
cgggtgaaggtgcgcctgatcattttcgacaaggagtcgtcgagcaaagcgatcaaggac
atcaaggagcaggaagtctacatgggggaaatccccctgatgaccgagaacggtaccttc
atcatcaacggtaccgagcgcgtcatcgtttcccagctgcaccgctcgccgggtgtgttc
ttcgaccatgaccgtggcaagacccacagctcgggcaagctgctgtattccgcgcgcatc
attccctaccgcggctcctggctggacttcgagttcgatccgaaggacgccgtgttcgtg
cgtatcgaccgtcgccgcaagctgccggcctcggtgctgctgcgtgcgctgaattacagc
accgaggaaatcctcgatgccttctatgacaccaacgtcttccacgtgaagggcgagatg
ctggcgctcgagctggttccgcaacgtctgcggggcgagatcgcctcgttcgacatcact
gacggcagcggcaagctgatcgtcgagcaaggccgccgcatcaccgcgcggcacatcaat
cagcttgacaagtccggcgtcaaagagctcgaaatgccgatggattacgtgctgggccgc
accgtggccaaggcgatcgtgcatccggcaaccggcgagatcatcgccgagtgcaacacc
gagctgaccgtcgaagtactggccaagatcgtcaaggcgcaggtcgtccgtttcgagacc
ctttacaccaacgacatcgattgcggtccgttcatctccgacaccttgaagatcgactcg
accaccaaccagctcgaagcgctggtcgagatctatcgcatgatgcgtcctggcgagccg
ccaaccaaggatgccgccgaaacgctgttcaacaacctgttcttcgcctccgagcgttac
gacctgtcggccgttggccggatgaaattcaaccgccgtatcggccgtgaagagatcgaa
gggccgggcgtactcagccgcgaagacatcgtcgccgtgctcaagaccctggtcgatatc
cgtaacggcaagggcatcgtcgacgacatcgaccacctgggtaaccgtcgcgtgcgttgc
gtcggcgagatggccgagaaccagttccgtgtgggcctggtgcgcgtcgagcgtgcggtc
aaggaacgcctgtcgatggccgaaagcgaaggcctgatgccgcaggacctgatcaacgcc
aagccggtcgcggccgcggtgaaggagttcttcggttccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtttccgcactcggcccg
ggcggtctgacccgtgagcgtgccggcttcgaagtccgtgacgtacacccgactcattat
ggtcgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggtctgatcaactcgctg
gccgcctacgcgcgcaccaaccagtacggcttcctcgagagcccgtaccgcgtggtcaag
gaaggcgaagtcaccgacgagatcgtgttcctctcggcgatcgaagaggccgaccatgtg
atcgcccaggccagcgccaagctagaaggccgcaagctggttgacgaactggttgctgtg
cgtcacctgaacgagttcaccgtcaaggcgccggaagacgtgacgctgatggacgtatcg
ccgaagcaggtggtttccgtcgctgcttcgctgattccgttcctcgagcacgacgacgcc
aaccgcgcactcatgggctcgaacatgcagcgtcaggccgtgccgaccctgcgttcggac
aagccgctggtgggtaccggaatggagcgcaacgtagcgcgcgactccggcgtctgcgtg
gtcgctcgccgtggcggcgtcatcgattcggtcgatgccagccgtgtggtcgtgcgtgtt
catgatgacgaggtcgagaccggtgaagcgggcgtcgacatctacaacctgaccaagtac
acccgttccaaccagaacacctgcatcaaccagcgcccgctggtaagcaagggtgacgtg
gttcagcgtggcgacatcatggccgatggtccgtccaccgacatgggtgaactggccctg
ggtcagaacatgcgcgtcgcgttcatgccctggaacggctacaacttcgaggactccatc
ctcctgtcggagcgcgtggttcaggaagaccgtttcacgaccatccacattcaggaactg
acctgcgtatcccgtgataccaagctcggcccagaggaaatcaccgcggacatccccaac
gtgggtgaggctgcgctgaacaagctggacgaggcgggtatcgtctacgtcggcgccgaa
gtcggcccgggcgatatcctggtaggcaaggtcacgccgaagggcgaaacccagctgact
ccggaagagaagctgctgcgcgcgatcttcggtgagaaggcgtccgatgtgaaggacacc
tccctgcgcgtgccgaccggcaccaagggcaccgtcatcgacgtacaggtgttcatccgc
gacggcgtcgagcgcgattcgcgcgcgctggccatcgagaagatgcagctcgacgagatc
cgcaaggacctcaacgaggagttccgtatcgtcgaaggcgccactttcgagcgtctgcgc
tcggcgctggtgggtgcgactgccgaaggcggcgcaggcctgaagaagggcgccgtgatc
accgacgagacgctggatggcctcgagcatggtcagtggttcaaactgcgtatggccgag
gacgcgctgaacgagcagctagaaaaggcccaggcctatctttccgaccgccgtcagctg
ctcgacgacaagttcgaggacaagaagcgcaagctgcagcagggcgatgacctggcaccg
ggcgtactgaagatcgtcaaggtctacctggcgatcaagcgacgcatccagccgggcgac
aagatggccggtcgccacggtaacaagggtgtggtctcggtgatcatgccggtcgaagac
atgccccatgatgccaacggcacgccggtggacatcgtgctcaacccgctgggtgtaccc
tcgcggatgaacgtcgggcagatcctcgaaacccacctgggcctggcggccaaggggctg
ggcgagaagatcaacctgatgctcgaagagcagcgcaaggtcgccgatctgcgcaagttc
ctgcacgagatctacaacgagatcggtggtcgccaggaaagcctggacgacctgaacgat
caggaagtgctggacctggccaacaacctgcgcaagggcgtgccgatggccaccccggtg
ttcgacggtgccaaggagcgcgagatcaaggccatgctgaaactggccgatctgccggaa
agcggccagatgcagctgttcgatgggcgtaccggcaacaagttcgagcgcaccactacc
gtcggctacatgtacatgctgaagctgaaccacctggtcgacgacaagatgcatgcgcgt
tccaccggttcctacagcctggttacccagcagccgctgggtggtaaagcgcagttcggt
ggtcagcgtttcggggagatggaggtctgggcactggaagcctacggtgccgcctacacc
ctgcaggaaatgctgaccgtcaagtcggacgatgtgaacggtcggaccaagatgtacaag
aacatcgtggacggcgatcaccgcatggagccgggtatgccggaatccttcaacgtactg
atcaaagagatccgttcgttgggtatcgacatcgatctggaaaccgaataa
DBGET
integrated database retrieval system
