Pseudomonas sp. JY-Q: AA098_05060
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Entry
AA098_05060 CDS
T09824
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psjy
Pseudomonas sp. JY-Q
Pathway
psjy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psjy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AA098_05060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psjy03019
]
AA098_05060
Enzymes [BR:
psjy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AA098_05060
Messenger RNA biogenesis [BR:
psjy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AA098_05060
BRITE hierarchy
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
ANI32886
UniProt:
A0A173HAM7
LinkDB
All DBs
Position
complement(1143858..1145300)
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AA seq
480 aa
AA seq
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MLKALRKIFGKGEAAPQAAAPAASVTPEARPAAKPAAPHANPAPKAEQPAAATPPAEQPA
KDKPRRERKPKPQASLWKPEDFVVEPQEGKTRFHDFKLSNELMHAIHDLGFPYCTPIQAQ
VLGYTLRGQDAIGRAQTGTGKTAAFLISIISQLQQTPPPKERYMGEPRALIIAPTRELVV
QIAKDAAALTKYTGLNVMSFVGGMDFDKQLKALEARHCDILVATPGRLLDFNQRGEVHLD
MVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMNLAKQWTTNPA
IVEIEPENVASETVEQHVYAVAGSDKYKLLYNLVTQNKWERVMVFANRKDEVRRIEEKLV
RDGINAAQLSGDVPQHKRIRTLESFREGRITVLVATDVAGRGIHIDGISHVINFTLPEDP
DDYVHRIGRTGRAGTSGVSISFAGEDDSYQLPAIEALLGRKIKCEMPPDELLKPVPRKHH
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
gtgctcaaagcactcagaaaaatattcggcaagggagaggccgcgccacaagccgccgct
cctgctgccagcgtgacgccggaagcccggcccgcggcaaaaccggccgcaccccatgcc
aaccccgcccccaaggctgagcaacctgccgccgcgacgccacctgccgaacaaccggcc
aaggacaaaccgcgccgcgaacgcaagcccaagccacaggccagcctgtggaagcccgag
gacttcgtggtcgagccacaggaaggcaaaacccgcttccacgacttcaagctgtccaac
gagctgatgcacgccatccacgacctgggcttcccgtactgcacgccaatccaggcgcag
gtcctgggttacaccctgcgtggccaggacgctatcggccgggcccagacgggcaccggc
aagacggccgccttcctgatctcgatcatttcccagttacagcagacgccaccgcctaaa
gagcgctacatgggcgagccgcgcgcgctgatcatcgcccccacccgcgagctggtggtg
cagatcgccaaggacgccgctgccctgaccaagtacaccggcctgaacgtgatgagcttc
gtcggtggcatggacttcgacaagcagctcaaagccctggaagcgcgccactgcgatatc
ctggtggccaccccgggccgcctgctggacttcaaccagcgtggcgaagtgcacctggac
atggtcgaggtgatggtgcttgacgaagccgaccgcatgctcgacatgggcttcatcccc
caggtccgccaaatcattcgtcagacaccgccgaaaagcgagcgccagaccctgctgttc
tccgccaccttcaccgacgatgtgatgaacctggccaagcagtggaccaccaacccggcc
attgtcgagatcgagccggagaacgtggccagcgaaacggtggagcagcacgtgtatgcg
gtggccggcagcgacaagtacaagctgctgtacaacctggtaacccagaacaagtgggaa
cgggtgatggtgttcgccaaccgcaaggacgaagtgcggcgcatcgaggaaaagctggta
cgcgacggtatcaatgccgcccagctgtcgggcgacgtgccgcagcacaagcgcatccga
accctggagagcttccgcgaagggcgcatcaccgtgctggtggccaccgacgtggccggg
cgcgggatccatatcgatggcatcagccacgtgatcaacttcaccctgccggaagaccct
gacgactacgtgcaccgcattggccgtaccggccgtgccggcaccagtggtgtgtcgatc
agctttgccggtgaggatgactcgtatcagctgccggcgatcgaagcgctgctggggcgc
aagatcaagtgcgagatgccgccggatgaactgctaaagccggtgccgcgcaagcatcac
tga
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