Pseudarthrobacter sp. NIBRBAC000502771: NIBR502771_03085
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Entry
NIBR502771_03085 CDS
T06121
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psni
Pseudarthrobacter sp. NIBRBAC000502771
Pathway
psni03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psni00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NIBR502771_03085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psni03400
]
NIBR502771_03085
Enzymes [BR:
psni01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NIBR502771_03085
DNA repair and recombination proteins [BR:
psni03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NIBR502771_03085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QDG61387
UniProt:
A0A4Y6QMF1
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All DBs
Position
645971..648448
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AA seq
825 aa
AA seq
DB search
MAGSRERVRVAGRELTLTNLDKIIYPETGTTKADVLAYYAAVAHVLIPAAANRPATRKRW
VNGVGTADKPGEVFFQKDLEDSAPGWLPRAAITHKDRTIHYPLVNDAATLTWFGQINSLE
IHVPQWRVDSHGNQLNPDRLVLDLDPGEGAGLPECREVALLARAILEDVGLDPVPVTSGS
KGIHLYAALDGTQTSEQISAFARELARALEADHPDLAVSDMKKTLRKGKVLVDWSQNNAA
KTTVVPYSLRGRPTPMVAAPRTWREIQSPKLKHLDYQEVLRRVSDGKDPFAAVVNAAAGA
AGQENTHDGDPRLGRYRSMRDPRETPEPFAGIPSGGNSFVIQEHHASRLHWDLRLEHEGV
LASWALPKGIPEAGDKNHLAVQTEDHPMDYLTFHGTIPKGQYGAGEMTIWDTGTYQLHKW
INGKEVIVTLDGSEGGGLGGRKKVALIHTGRGQGTDDGGQWLIHLMDQEKQGGRRRHAAP
AAQEPSRDTSGKEPAVAPAPAISASADPLDYAPMMATAGTAADLQGSAWQYELKWDGVRA
LLVADTEKIRIFSRNGNDVTRTYPEFTDRACWPEQPFVADGEIIAVGPGGRPDFGLLQGR
MKLTRAADVAKARTAIPVQLMLFDLLFHNGEDLRRLPLSTRRQRLEDFFAPSGCPVDLSM
VLEESVDLLLDSARELGLEGVMAKRTDSRYVSGQRTRTWIKLKTEQTQEVVVGGWRPGKG
GRQDTVGSLLVGIPDGGKLQYVGRVGSGFSSRELTELRQTVERLGRKTSPFHDVPRPDSA
DAHWVSPELVGEVTYSEWTGPGRLRHPRWRGWRVDKDPSDVVRES
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcagtagggaacgtgtccgggtggcgggacgcgaattaacgctcaccaacctg
gacaaaatcatctatccggagaccggcaccaccaaggccgacgtgctggcctactatgcc
gcggtggcccacgtcctgatcccggccgcggccaaccgtccggccacccgcaagcggtgg
gtcaacggagtgggcaccgcggacaaacccggcgaggtgttcttccagaaggacctggag
gattcggcgcccggctggttgccgcgggcggcgattacccacaaggaccggaccatccat
tacccgctggtcaatgacgccgcaacgctgacgtggttcggccagatcaattcgctcgaa
atccatgtgccccagtggcgggtggattcgcacggcaaccagctcaacccggaccggctg
gtgctggacctggacccgggagagggcgccggactgccggaatgccgggaggtggccctg
ctggcgcgggccatcctggaggatgtggggctggacccggtgccggtcaccagcggcagc
aagggcatccacctctacgcggcgctggacgggacccagacctcggaacagatctccgcc
tttgcccgggaactggcacgcgcccttgaagcggaccacccggaccttgccgtcagcgac
atgaagaaaaccctgcgaaaaggcaaggtgctggtggactggagccagaacaatgccgcg
aaaaccaccgtggtcccctactcgctgcgcggcaggcctacgcccatggtggcagccccg
cggacgtggcgggaaatccagtcgccgaagctcaagcacctggactaccaggaggtgctg
cgccgggtgagcgacggcaaggacccgttcgccgccgtcgtcaacgctgcggcaggtgcc
gccggccaggaaaacacgcacgacggcgacccgcgcctgggcaggtaccgctccatgcgg
gacccgcgggaaacacccgaaccatttgcggggatcccctccggcggcaacagctttgtc
atccaggagcaccacgccagccggctgcactgggacctgcggctggaacacgaaggcgtc
ctggcgtcatgggcgctgcccaaaggcattcccgaggccggggacaaaaaccacctggcg
gtccagaccgaggaccatcccatggactacctcaccttccacgggaccattcccaagggg
cagtacggggcaggtgagatgactatctgggacaccggcacataccagctgcacaagtgg
atcaacggcaaggaagtcatcgtcacgctggacggatccgaaggcggcggcctgggcggc
aggaagaaagtggcgctcatccacaccggacgcggccagggcacggacgacggcggccag
tggctcatccacctgatggaccaggaaaagcagggtggacgacggcggcatgcggctccg
gcggcacaggaaccgtcccgggacaccagcggaaaagagcctgccgttgccccggcacca
gccatcagcgcgtccgcggaccccctggattacgcacctatgatggctaccgccgggacg
gcggcagaccttcagggaagtgcgtggcagtacgagctcaagtgggacggtgtccgggcc
cttctggtagcggacaccgaaaagatccggatcttctcccgcaacggcaatgatgtcacc
aggacctaccccgagttcacggaccgggcctgctggccggagcagccgttcgtggctgat
ggtgagattatcgccgtcgggcctggcggaaggcctgactttggcctgctgcaggggcgg
atgaaactcacccgggcggccgacgtcgccaaagcccgtacggccatcccggtccagctg
atgctgttcgatctcctgttccacaacggagaggacctccggcggctgcccctcagcaca
cggaggcagcggctggaggacttttttgcgccctccggctgcccggtggacctgtccatg
gtcctcgaggaatccgtggacctcctcctcgacagcgcccgggagcttggccttgaaggg
gtgatggccaagcggacggacagccgctacgtgagcgggcagcggaccaggacctggatc
aagctcaagacggagcaaacccaggaggtggtggtgggtggctggcggccgggaaagggc
ggccgccaggacaccgtggggtcgctgctggtgggaattcccgacggcggcaagctgcag
tacgtgggccgcgtgggttctggtttcagcagccgggagcttacggaactgcggcagacg
gtggaacgacttggccggaagacgtcgcccttccacgacgtgccccgcccggattccgcc
gatgcccactgggtgtcaccggagctggtaggcgaagtaacctacagcgaatggacgggg
cccggcaggcttcggcatcctcgctggcggggctggcgcgtggacaaggacccgtcggac
gtggtgcgggaaagctga
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