Papaver somniferum (opium poppy): 113288925
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Entry
113288925 CDS
T05758
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28-like isoform X1
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
psom
Papaver somniferum (opium poppy)
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
psom03041
]
113288925
03009 Ribosome biogenesis [BR:
psom03009
]
113288925
Enzymes [BR:
psom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113288925
Spliceosome [BR:
psom03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113288925
Ribosome biogenesis [BR:
psom03009
]
Eukaryotic type
Pre-60S particles
Helicases
113288925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
ARTD15_N
Motif
Other DBs
NCBI-GeneID:
113288925
NCBI-ProteinID:
XP_026393863
LinkDB
All DBs
Position
6:114152214..114158746
Genome browser
AA seq
725 aa
AA seq
DB search
MEEEEPKFLFETSDEEEERVKPRKSQSPWDFGVYSESVAEEHARRSTTSIDSKISKVREE
HSLPIPDESDEDEDDPESEPEPEPEQEENKEEEIEEIKKPVVAKQPFFSSSDGTSFHANS
FMDLHISRPLLRACEALGYSKPTPIQAACIPLALSGRDICGSAITGSGKTAAFTLPVLER
LLFRPKRIHAIRVLVLTPTRELAVQVHSMIEKLAQFTDVRCCLVVGGLSTKVQEAALRSM
PDIVVATPGRMIDHLRNTMSVGLEDLAVLILDEADRLLELGFSAEISELVRVCPKKRQTM
LFSATMTEQVDELIKLSLNKPLRLSADPSTKRPASLTEEVVRVRRTREVNQEAVLLALCS
KTFTSQVIIFSGTKEAAHRLKIIFGLCGLKAAELHGNLTQVQRLDALEVFRKQEVDFLIA
TDVAARGLDIIGVKTVINFACPRDLTSYVHRVGRTARAGRAGYAVTFVTDNDRSILRAIA
KRAGSKLRSRIVAEQSISKWCQTIEQLEDQVSEVLQEERDERAIRKAEMEATKAENIIKH
RDEIFSRPKKTWFSTEREKLLASQAAKKAAMNNGQGPSKEVISVQEAEDLKTKEKRKRER
EKNMPRKKRRRMEANREMLEDQEAEQKQGRGNNKSEKEGKLLVDVAKRSAKAVKAVSKAQ
AAGKFVRKVEKKTPKRASQRTQSKPEEMKELFQSDMHDKKQKKSTQGGMKKNTKSFKSKS
RYKRK
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggaagaacccaaatttctgtttgaaacaagtgacgaagaagaagaaagggta
aaacctagaaaatcacaatctccatgggattttggtgtatactctgaatcagttgcggaa
gaacatgctcgaagaagtacaacttctattgattctaaaatttctaaagttcgggaagaa
cactctcttcccatcccagatgaaagtgatgaagatgaagatgaccctgagtctgaacct
gaacctgaacctgaacaagaagagaataaagaagaagaaattgaagagattaagaagcct
gtagttgctaaacaacccttcttttcatcttctgatggtacttcgtttcatgccaattcg
tttatggatcttcatatttcacgtcctttacttagagcttgtgaagctttaggttatagt
aaaccaacgcctattcaggctgcctgtatacctttggcattaagtggacgtgatatctgt
ggaagtgctataactggttctgggaagacagcagcattcactttacctgtattggagagg
ttactgtttcgtcctaagcgcatacatgctataagggttctagttcttacaccaacaaga
gagttggctgtacaggtgcatagtatgatagagaaacttgcgcaatttactgatgtcaga
tgttgcctggttgtcggtggactttcaacaaaggtgcaagaggcagccttgagatcaatg
cctgatatagttgtggccactccagggcgtatgatagatcacttacgaaatacaatgtct
gtggggttggaagatcttgcagttttaatcctggatgaggcagatcgtcttttagaactt
ggatttagtgctgaaattagtgagctggttcgtgtttgtcctaaaaaaagacagaccatg
ctattttcagccaccatgactgagcaagttgacgagcttatcaagctttctttaaataaa
cctttgcgcctttcagcagatccatctacaaaacgacctgcgagtctgactgaagaggta
gttagagtgcgccgtacacgggaagtaaatcaggaagcagttcttcttgcattgtgctca
aaaaccttcacatctcaagtgatcattttcagtggaacaaaagaagctgcccacaggtta
aaaattatatttggattatgtggccttaaagctgctgagcttcatggaaatcttacccaa
gttcagcgtcttgatgccttggaagttttcaggaagcaggaagtggattttctaattgca
actgatgttgcagctcgtgggcttgacattattggtgttaaaacagttataaactttgca
tgccctcgtgaccttactagctatgttcatcgagttggtcgtacagctagagctggaaga
gcaggatatgctgttacatttgtcacagataatgataggtctatcttgagagccattgct
aagagagctggttcaaagttgaggagtagaatagttgcagagcaatcaatatccaagtgg
tgccaaacgattgagcaactagaagaccaagtttcggaggtgcttcaggaagaaagggat
gagcgagccataagaaaagctgaaatggaagcaacaaaggcagaaaatatcattaaacat
agggatgaaatattttcacgccctaaaaaaacctggttttctacagaaagggagaaatta
cttgcatcccaggcagcaaagaaggctgctatgaacaatgggcaaggtccgtcaaaggag
gtaattagtgttcaggaggcagaagatctcaaaacgaaggaaaagagaaagcgtgagcgt
gagaaaaatatgccacggaagaagcgtagacgaatggaagctaatcgtgagatgttggag
gatcaagaggccgagcagaagcagggaagaggaaataataagagcgaaaaggaaggaaaa
ttacttgtagacgtggctaaacgatcagcaaaagcagtgaaagccgtaagtaaggcgcaa
gctgcaggcaaatttgtgagaaaggttgaaaagaagactcctaaacgcgcttctcagaga
actcaatcaaaaccagaagagatgaaagaactattccagagtgacatgcacgacaagaag
cagaagaaaagcacacagggtgggatgaagaaaaataccaaatcttttaagagcaaatca
cggtacaagcgaaagtag
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