Papaver somniferum (opium poppy): 113308623
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Entry
113308623 CDS
T05758
Name
(RefSeq) regulator of nonsense transcripts UPF2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
psom
Papaver somniferum (opium poppy)
Pathway
psom03013
Nucleocytoplasmic transport
psom03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113308623
03015 mRNA surveillance pathway
113308623
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113308623
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
113308623
mRNA cycle factors
P-body specific factors
113308623
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
113308623
NCBI-ProteinID:
XP_026412869
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All DBs
Position
9:complement(154648824..154657084)
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AA seq
1189 aa
AA seq
DB search
MDHPEDECRVPGKQDDEENVARLEEFKKSMEAKMTLRQSNLNPERPDTGFLRTLDSSIKR
NTAVIKKLKQINEEQKEGMMEELRHVNLSKFVSEAVTAICDAKLRTSDIQAAVQICSLLH
QRYKEFSPSLVQGLLKIFSSGKSGDELDVDKSSKAMKKRSTLKLLLELYFVGVIDEAGVF
VTIIKDFTSSDHLKDRDATSTNLSLLASFARQARVFLGLSLSGQEFQEEFFKGLNITADQ
KKIFKKIIYTYYDVAAELLQSEHAALRQLEHENAKILNAKGELSEENATLYEKQRKSYDH
LFRGVSSLAEALDMQPPMMPEDGHTTRVTTGDDTSSPASGKESSALEPVWDDEDTRAFYE
CLPDLRAFVPAVLLGESETKAPEQSAKSQEQSTESTSEPEQSPLAVQEATEGCADAEALQ
EGKLDVKAKVKEDKDKEKTNDSEKEKGKEKDAEKKVDNEKEKPKGVEGTSLDALLQRLPG
CVSRDLIDHLTVEFCYLNSKSNRKRLVRALFNVPRTSLELLPYYSRLVATLATCMKDISS
MLLAMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIAPAGFVFICLKGCLDDFTHH
NIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPP
ERSARVSKVRPPLHQYIRKLLFSDLNKSSIEHVLRQLRKLPWSECETYLLKCFLKVHKGK
YSQVDLIASLTACLSRYHDEFAVAVVDEVLEEIRVGLEVNDYGMQQRRIAHMRFLGDLYN
YELVDSSVIFETLYLILNFGHGTPEQDVLDPPEDWFRVRMIITLLHACGHFFNRGSSKRK
LDRFLTYFQRYILSKGPIPLDIEFDLQDLFANLRPNMARYLSIEEVNAALIDLEEHERKG
STDKTNNEKLRRTTSASISANGKGEANGVEENGKGHEDEVDSESDTGSGSIFRDGREGEV
ESYEDRSENQDEDSDSDDEGGPAASDEDEVQVRQKVIKVDPEEEADFDRELKALMQESLE
SRKLEMRSRPTMNMVIPMNMFEGSTKDHHHGRGSEGENSGEDTMDEEGGGKKEVRVKVLV
KRGNKQQTKQMFIPKDCSLVQSTRQQEAAELEEKQSLKKLILEYNDREEEEMNGVGAQTT
NWVQTGVSRPMLGRGSTWEGSGGRGGGVRYRHHTYSSGGGGGFYYGRRR
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccctgaagatgaatgtcgtgttccgggtaagcaagatgacgaggaaaatgtt
gcccgtctggaagagtttaagaaatcgatggaagcaaagatgactctacgtcagagtaat
ttgaatcccgaaaggcctgatacgggtttcttgaggacactagattctagcattaagcgc
aatacagcagtcattaagaagcttaaacagatcaatgaagagcagaaagaaggaatgatg
gaagagttacgacatgtcaacttgagcaaatttgttagtgaagctgtgacagctatttgt
gatgccaagcttagaacttcagatatccaagcagctgtccagatatgctctttgcttcac
caacggtacaaggagttttccccaagcctggttcagggtttgttaaaaatcttttcctcc
ggaaaatctggagatgaattggatgttgataagagctcaaaagccatgaagaaacgtagc
accttaaaacttcttctggaactttattttgttggagttatagatgaagctggtgttttt
gttactattatcaaagattttactagctcagatcacttaaaggatagagatgcaacttca
acaaatttatcccttctcgcgagttttgctcggcaagcaagagtgtttcttgggctttct
ctatctggacaggagtttcaagaagagtttttcaagggcctcaatatcactgcagatcaa
aagaaaatcttcaaaaagatcatttacacgtattatgatgtggctgcagagctgctgcag
tcagagcatgctgcccttcgtcaattggagcatgaaaatgcaaagattttgaatgctaaa
ggggagctcagcgaggaaaatgcaactttgtatgagaagcagcgaaagtcatatgaccat
ttgtttcgtggtgtttcatctttagcagaagcacttgatatgcagcctccgatgatgcca
gaagatggtcacacaactagggttacaactggagatgatacatcatcacctgccagtgga
aaagaatcttctgctcttgagcctgtgtgggatgatgaagacacgagggctttctatgag
tgcttaccggatctaagggcatttgtccctgctgttttattgggagaatcagagacgaag
gctcctgaacaatctgccaaatcccaagaacaatcaactgaatctacatccgagccagag
caatctcccctggctgtacaagaagccacagaggggtgtgcagatgctgaagctttgcaa
gagggaaaacttgatgtcaaagcaaaagtcaaggaggataaagataaagaaaaaactaac
gattcagaaaaggagaaaggaaaagaaaaagatgcagaaaagaaggtcgataatgagaaa
gagaaacccaaaggtgtcgaaggaactagcttggatgctttgttgcagaggcttccgggc
tgcgtgagccgtgatcttattgatcatttgacggtagaattctgttatctaaattcaaag
tcaaatagaaaaaggcttgtaagagcgttgtttaatgttccaaggacttccttggagtta
ctaccgtactattctcgtctggtggccacactggcaacgtgtatgaaggatatctcttct
atgctactggctatgttggaggaggaattcaatttcctaataaataagaaggatcaaatg
aatatcgaaacaaagatcaggaacataaggtttatcggagaactttgcaagttcaaaatt
gcacctgctggtttcgtctttatttgtttgaagggttgcttagatgacttcacccatcac
aacatagatgttgcatgcaaccttcttgagacttgcggaaggtttttatatcgatctcct
gaaacgacggtccgcatggcaaatatgcttgagatattgatgcgcttaaaaaacgttaaa
aatttggatccccgtcacagcacacttgtggaaaatgcttattacctgtgcaaacctcct
gaacgatctgcccgagtctctaaagtccgtcctccattacatcagtatatcagaaaactg
cttttctcagacctaaataaatcctccattgagcatgttctgaggcaacttcgtaaatta
ccctggagtgaatgtgaaacgtacctcttgaagtgctttttgaaggttcacaaaggaaaa
tacagtcaagttgacctgattgcttctctaactgcttgtttgagtcgctatcatgatgaa
tttgctgtggcagttgttgatgaggttttggaggagatacgagtggggttggaggtgaat
gattatgggatgcagcaacgaagaattgcacacatgcggttcctgggggatctgtacaac
tatgaacttgttgattcctctgttatatttgagacactttatctgatacttaattttggg
catgggacacctgagcaagatgttctggacccacctgaagattggttccgcgtccggatg
attataacacttctccatgcttgtgggcacttcttcaatagaggttcttcaaaacgaaaa
cttgatcgattcctaacttatttccagagatacatattaagcaaaggcccaatacctttg
gatattgagtttgacttacaggatctatttgccaatttacgcccaaacatggcgagatat
ttgtcaatcgaggaagttaatgcggcacttatagatcttgaagaacatgaacgcaaaggc
tcaactgacaagaccaacaatgagaagctaaggcggacaacctctgctagtatctccgca
aatgggaaaggcgaagcaaatggggttgaggaaaatggtaaaggtcatgaagatgaggta
gacagtgagagtgatacaggaagtggaagtattttccgggatgggcgtgaaggtgaggta
gagtcttatgaggacagatcagagaatcaggatgaggatagtgacagtgatgacgaaggt
gggcctgcagcttccgacgaggatgaagtccaagtcaggcaaaaggtaataaaagtagat
cccgaggaagaagctgattttgaccgtgagctcaaggctcttatgcaagagagtttggaa
tcgcgtaaactagaaatgcggtccagaccaacaatgaacatggtgataccaatgaatatg
tttgaaggatcaacaaaggatcaccatcatggacggggctctgaaggtgaaaacagtggt
gaggatacaatggatgaagaaggtggtggtaagaaggaagtgcgggtgaaagttcttgtg
aaacgtgggaacaaacaacagacaaagcagatgttcatccctaaagattgctcattggtg
cagagcacaagacaacaagaggctgccgagttagaagagaaacagagtttaaaaaagcta
atattggagtataacgacagggaggaggaagaaatgaatggagttggagcacaaacaacg
aattgggttcaaaccggagtaagtagacccatgttaggccgtggaagcacatgggaggga
agtggtgggagaggtggtggagttcgataccggcatcacacttactcttctggtggtggt
ggtggattttactacggaaggaggaggtga
DBGET
integrated database retrieval system
