Papaver somniferum (opium poppy): 113319372
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Entry
113319372 CDS
T05758
Name
(RefSeq) zinc finger CCCH domain-containing protein 41-like isoform X1
KO
K13192
RNA-binding protein 26
Organism
psom
Papaver somniferum (opium poppy)
Brite
KEGG Orthology (KO) [BR:
psom00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
psom01009
]
113319372
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psom03019
]
113319372
03041 Spliceosome [BR:
psom03041
]
113319372
Protein phosphatases and associated proteins [BR:
psom01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
113319372
Messenger RNA biogenesis [BR:
psom03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
113319372
Spliceosome [BR:
psom03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
113319372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
PWI
Nup35_RRM
zf_CCCH_4
zf-CCCH
Hid1
Motif
Other DBs
NCBI-GeneID:
113319372
NCBI-ProteinID:
XP_026423420
LinkDB
All DBs
Position
10:complement(6060043..6067742)
Genome browser
AA seq
1089 aa
AA seq
DB search
MKFDESSLTRYLVKNLQPLTEADPLILAKYVVALLKKEKPIKDLQNLCAENLVEFLGQDT
NSFIANLFQALEDESIASSTKSLNSLERDKSSSSIARVASVELNTSFSKTEELSPSGRSD
SEENEISDDDDDDRNHKHRRRETRSESSEKDVPDQPFRRQNRKRNRPFDYGHMFGENDPQ
SSGSQGQYNPTSMVIDQSGRSEKRRLGLAPLPRGNFESNQRGRVNQALRGEGGSRTDLSM
SLNRLPGGRGRGMTSGLWSQHDPRFTPAGTLDFASQIAAQGPTSGLFAGRGLQSAATTQN
APWGAFGLIPGMPNGGLDALHPLMQGALRAPINPPLNIGIAHQRCRDFEERGFCLRGDMC
PMEHGVNRIVVEDVQSLSQFNLPVSVPSARHLGKPTGSGALPTVSGASNLSSSSKGLHGK
SSIPGTNGNGLGMNGVLPVSSSAGEADLYDPDQPLWNNSSLETSSSLLRLSSPKSNEAEA
LWNTDPSDRRNFTLSDSVSSDFIGRNITSSDGLQGTNSSVWGRIGSSGNKAEVSGKNESA
AASSGYLGSEAKEDQVEGLLPGGSGSVRQRKWTIPEDVGSKVKICASTSRQQSDPTRVTE
RASQKAQRTLFVNGIPLKSNKKDSLLSHFQKFGEVIDIYIPLNSERAFVQFSTRKEAESA
LKAPDAVMGNRFIKLWWANRDSIPENGVGVGYTTSMAPHGLVGASRPPRSSSTNRGKENL
PAVALKVGVMSVPDTSVPVAVNAVANGSKDTPSQTKLESLELLKEQLRLKQEMLDQKRND
FRRQLDKLEKKAVIVKGEATAQQIGKKQQVGAATDIVDSVTPHSTNSSKAMLKPGVDKSQ
DMNSLGENLSFPSSKIISPAAVQSPGTMMPTSHPSVAGGSSFSANRFKLDNRPTTFRILP
PVPADLANVAVLKEHFSSFGDLSTVEVEDFDHYNDSANPELSDSRSARITFTTRRSAEKA
FTNGKCLQGHNLKFMWLTTSSNPTSSSGRESSSTSTTKGPPEAEGRTGNEVSGASTSTTG
ISTRHVSELASTSGNGEAVSSEEVNGGDKPVGLVEACGGSPTVMSPSQKQSPKAYDVIHE
DSHDVKNAE
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgatgaatcttctttaactaggtatcttgtgaagaatcttcaacccttgaca
gaagctgatccgttaattcttgcaaagtatgttgtagcattgttgaagaaggaaaaacct
attaaagacctacaaaatctttgtgcagagaacttagtggaatttcttggtcaagataca
aattctttcattgcaaatttgttccaagcccttgaagatgaatctattgcatcatcaact
aagagtttgaattcccttgagcgagataaatcatcttcatctattgctagagtggcttcc
gtagaactaaatacatctttttcaaaaacggaggagctttctccctctggtcgaagtgat
tccgaggagaatgaaatcagtgatgatgacgacgatgatcgtaaccacaaacaccgaagg
cgggaaacacgttccgagtcttctgagaaggatgtgccagatcaacctttcagaagacaa
aacagaaaacgtaatagaccttttgactatgggcacatgttcggcgagaatgatccccaa
tcaagtggaagccagggacagtataacccaacttctatggtgattgatcagtctgggagg
tctgaaaaaaggcgtcttggcttggcacctttacctcgaggtaattttgaatcaaaccag
agaggcagagtaaaccaggcacttcgtggtgagggtggttctcgcacagatctgtccatg
tcgttaaatcgtcttcccggtggtagaggaaggggaatgacctctggcctctggagccaa
catgatccaaggttcacccctgcaggcacacttgattttgcttctcaaatagctgcacaa
ggacctacatctggtctgttcgcaggaagggggttgcaaagtgctgcaaccacacaaaat
gcaccttggggtgcatttgggttaattcctggaatgcccaatgggggtctggatgcgctt
catccacttatgcaaggagcacttagggcgccgattaatcctccacttaatattggtata
gcccatcagcggtgtagagattttgaggagcgtggattttgtctgagaggcgatatgtgt
ccgatggagcatggtgtaaacagaatcgtcgtcgaagatgtccagagtctttcacagttc
aacctccctgtttcggttccaagtgcacgccatttaggaaaacctactggatcaggagcg
ttacctacagtcagtggtgcttcaaacctgtcatcaagtagcaagggtttacatggtaaa
agtagcattcccgggacaaatggaaatgggctgggcatgaacggggtgttacctgtttcc
tctagtgcaggggaggctgatttgtatgatcctgatcagccgctgtggaataatagttct
cttgaaacatcaagttcactcctgaggctttcttcgccaaaaagtaatgaggctgaagct
ttatggaataccgatccttcagatcgccgaaattttacattatctgacagtgttagtagt
gatttcatagggagaaatattacctcttctgatggtttacagggtacaaattcttctgtt
tggggacggatcggaagttctggaaataaagcggaagtgtcgggtaagaatgaaagtgca
gcagcttcctcagggtatcttggaagtgaagcaaaagaagatcaggtggaggggttacta
cctggtggttcaggtagtgttcgtcaaagaaaatggactattcccgaggatgttggttca
aaagtaaagatttgtgcttctacgtcaaggcagcaatctgatcctacccgtgttacagag
agagcctctcagaaagctcagcgtaccctatttgttaatggtattccccttaaaagtaac
aaaaaggattccctcctttcacattttcaaaagtttggggaggttatcgatatttatata
ccgcttaacagcgagcgagcttttgtccagttttctacaagaaaagaggcagaatctgcc
ctcaaggcacctgatgctgtaatgggtaatcgcttcatcaaactatggtgggctaaccga
gatagtattcctgaaaatggtgttggtgttggttataccacatctatggctccccatggt
ctcgtaggtgcttctcgtcctcctcgatcatctagtactaacagaggaaaggagaatctc
ccagctgtagcactgaaggttggtgtcatgtctgtgcctgatacttcagtaccggtagct
gttaatgcagtagcaaatggttctaaggacacaccatcacagacgaagctggagagcttg
gaacttttgaaggaacaactgcgtctaaagcaggaaatgctggatcagaaacggaatgac
ttccggcgccagttggataagcttgagaaaaaagccgttatagtgaaaggtgaagcaaca
gcccagcaaataggtaagaaacagcaagtgggagcagcgactgatattgtagattctgta
actccacactcaacgaattctagtaaagctatgttgaagccaggagttgacaagtctcaa
gatatgaacagtcttggggagaatctttcatttcctagttctaaaataatctcacctgcc
gcggtgcagtcaccggggacgatgatgccaacaagtcatccatcagtggcaggagggagt
tctttttcggcgaatagattcaaattggacaatcgtcctactacctttcgaattcttccg
cctgttcctgctgatttggcaaatgttgctgtattgaaggagcatttttcatcatttggt
gatctctctacagttgaggtggaggattttgatcattataatgattctgcaaatcctgag
ctatctgacagtcgctcagctcgtataacttttacaacacgtcgatcggctgagaaggca
tttacaaacggtaaatgcttgcagggccataatttaaaatttatgtggctgacgacctcc
agtaatcccactagcagtagtgggagagaaagttcctctacttccaccaccaagggtccc
ccagaggctgaaggccgaactgggaatgaggtatctggagcttcaacatcaactacaggt
atatcaacacgtcatgtttctgagctggcttctacctctggaaatggagaagctgttagt
tcggaagaggtaaatggtggagataagcctgtgggccttgttgaagcttgcgggggcagt
cctactgtcatgtcaccgagccagaagcagtcacctaaagcttatgatgtgattcacgag
gatagtcatgatgtgaaaaatgcagaatga
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