Polyodon spathula (Mississippi paddlefish): 121294299
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Entry
121294299 CDS
T07273
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2
KO
K10140
DNA damage-binding protein 2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03420
Nucleotide excision repair
pspa04115
p53 signaling pathway
pspa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121294299 (ddb2)
09124 Replication and repair
03420 Nucleotide excision repair
121294299 (ddb2)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
121294299 (ddb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
pspa04121
]
121294299 (ddb2)
03400 DNA repair and recombination proteins [BR:
pspa03400
]
121294299 (ddb2)
Ubiquitin system [BR:
pspa04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
121294299 (ddb2)
DNA repair and recombination proteins [BR:
pspa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
121294299 (ddb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
NBCH_WD40
T2SS-T3SS_pil_N
Motif
Other DBs
NCBI-GeneID:
121294299
NCBI-ProteinID:
XP_041073818
LinkDB
All DBs
Position
19:complement(2666941..2674223)
Genome browser
AA seq
517 aa
AA seq
DB search
MAKKKIRLAVPEPGCKKEGTAPGRRKKEGQCPEEPNSKKLKVNKATRTPGKAVRRPSYQT
PPGCAESDQTAKQRNIIHYINKNALGQSIPSQLRQCLQQPFVRSLASYKLFRTASPFDRR
VTSLEWHPTHPNTVAVGSKGGDLILWNYEVLNKTCFIQGKGAGDFIGGMKFSPTNPSQVY
TASGDGTLSLQEFGGRTAQIFSRTSDCRHDHHNVCLWYCSLDVSASRQVVVTGDNVGNTV
LLSADGKEIWNLRLHRKKVTHVEFNPRCDWLLATASVDQTVKIWDMRHIKDKNSFLHELP
HNKPINSAHFNLTDGSKLLTTDQYDEIRVYSSADWSKPQHTIQHPHRHFQHLTPIKATWH
PLYDLIVAGRYPDLQHTDELRTIDVFDGNTGGLVCQLHNPNAPGIVSLNKFNPMGDTLAS
GMGFNILIWSREEMVTSKQETLLKMMQEQGIGAGTSRGQRGPQRHPRGEGSGNAELGKLK
KKLASLESAGVSTKTKIKTKENTKPQKEKQKKKHLQD
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaaaaaattcgactggctgtacctgaacccgggtgcaaaaaagaggggaca
gctccaggaaggaggaaaaaggagggccagtgcccagaggaaccgaactccaaaaaactg
aaggtgaataaagcgacaaggacaccggggaaagcagttagaagacctagctaccaaacc
cctccaggatgcgcagagtctgatcaaacagccaaacagagaaacattattcattacatt
aacaagaatgcactgggtcaaagcattccttcacagctgcgacagtgtctccagcagccg
tttgtgcgctccctggcttcctacaagctcttccggacagccagccccttcgatcgcaga
gtgacaagcctggagtggcacccgacgcaccccaacactgtggccgtgggctccaaaggt
ggagacctaattctgtggaactacgaagtgttaaataagacctgcttcatacaagggaaa
ggagcaggggattttattggggggatgaagttcagtcctaccaacccatcccaagtctac
accgcgtctggcgatggcactctgagtctgcaggagtttggtggtagaacagctcaaata
ttctcaagaacctcagactgcaggcacgatcaccataatgtttgtttgtggtactgcagc
cttgacgtctctgcaagcagacaggtggtggtgactggagacaacgtgggaaacactgtc
ctcctgagcgcagatggcaaagagatttggaatctcagactgcacagaaagaaggtgacc
cacgtggagtttaaccctcgctgtgattggctgctagcaacggcttcagtagaccaaacg
gttaaaatctgggacatgcggcatattaaagacaagaacagtttcctgcacgagcttcct
cataataaaccaatcaattcagcccatttcaacctcacggatggttccaagctgcttacc
acagaccagtatgatgagatccgggtctactcctctgctgattggtctaaacctcagcac
actatacagcacccacacaggcatttccagcacctcacacctatcaaggctacctggcat
ccactgtatgacctgatcgtagcagggcgctacccagatctccagcacactgatgagttg
agaaccatcgatgtgttcgacggcaacacaggagggcttgtgtgccagctgcacaatccc
aacgctccaggaatcgtctctcttaacaaatttaatcccatgggagacacactggcgtca
ggaatgggatttaacattctgatttggagccgtgaagaaatggtgaccagcaagcaggaa
actctgttgaaaatgatgcaagagcagggtattggggccggcacctccaggggacagagg
ggacctcaacggcacccccgtggggaaggcagtggaaacgcagaactgggcaagctgaaa
aagaagctggccagcctggagtcagctggagtgagcaccaagaccaagataaagactaag
gaaaacaccaaaccacagaaagaaaagcagaaaaagaagcacttgcaggactaa
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