Polyodon spathula (Mississippi paddlefish): 121299007
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Entry
121299007 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC121299007
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
zf-C2H2_6
zf-C2H2_jaz
zf-C2HE
Motif
Other DBs
NCBI-GeneID:
121299007
NCBI-ProteinID:
XP_041082367
LinkDB
All DBs
Position
24:complement(18315467..18330021)
Genome browser
AA seq
2865 aa
AA seq
DB search
MARGAGTDSTWQANAVMGEESTSSGSPQNLPPICSPDEDLTRHIENLIAIELGACCLSDL
ENSVDFCDPSLGVEDYPSTGEMEKTLTVATDGLSQLSRPADAPGLPGESVDGKSNSGVSS
STTWLAASLLDPASSSAGCCPGKGIVPGLTGHLINFAEQSGGEFPAGQRDAPPHNDAVGF
PSWHASVLEPYSDVSSCSGDEAQDIEAGRDGSLTREGWDSSPPSPEDGGRGGRTGGDSPA
FDADNEEESDGSGSPANPATPRTADGGGFPCQQQEKNDAVKPQDSESSPDSEAHPEGGSS
SESRDRLSEPQQNDRHTGGGILEEYSNIGSPVEDVAEPSAPCNIDGVRDNQTQQILVPVS
NHVAISSEIEIETASGPGHTPIQATQGLQEAELNASKLWDKPPAHAENSLHHSPMREATA
APDDAGLLAAAATAELPGRYSDVSSCSEDETGSPTHRAAEDDPPQQRGENPARETDSGPR
TGEGPTASNAEDPVPCDGPLGWGWNAPGSPEAASDADPSSPLLHDGSLPDQELEEPELKE
SLAETSESQEPKEMEDWNACLLEGEPERESEDSAAGVMSEEKEAYSRRGSEEKVGGSQYM
DLASSLSMGRILFPVVALKRPRGPGTQESYDCDACGESFNNAEAVIAHHHGAHTEQRLYN
CRECAGFFTSKSFVESHRCREPPDSGPPPGFSSGKKSDSTREHLKKCRMADGRYKCSHCS
ETFVKTYDLYSHERKHTGTTPFRCQDCGRYFSQVPNLKRHIETARAGGRKTGCVMGNGTK
KPDEAPVKKRRPGPRSFQESQQRLLAETTAKNDLYENCSRCYVRLVDFRKQKGRRNAQQA
LQGSCPLAGKGPYECTVCGLSFHVRNSLLAHSLAHGDEPPFRCFACVKTFETSSNRARHV
AMNCRAGEGKQGQLLAKMKRARDVDANLGPYKCPRCPMIFKYSFNRIRHVRHQCPYSLAN
KADLVVPNPNGTGDLYKCALCPQLFTHPSNRTRHMRLSCKNARGKRDGQKAGAQKSVAAA
AERMRRAKPQDSSVFRTSGDPAQPYACEFCQKKFRTGQECRVHRRIHTGERPYRCSFCGL
RFIQSGHLRGHLRVHGTRYQCDKCKKVCATLAELFKHKRVHRKGGPQGDEAEAKRKGVPD
EGQGEDRLYECETCKKRFSLASHLQRHLRSHAGQTAFKCSECGQVFGTAQSLKLHWHKHR
SFNLTCRFCSKAFSQRGSLVRHIRIHTGEKPFPCSRCGEFFPRWDARKVHQLKCAGSMAA
AASESGPEEKKATTKGKEARSGAVRKLAGASDNRCKICLKSYSSFHSLSRHLNTHSPVNR
YFCSKCNKGFYRKDHHLSHEVRCNGVPRKPRGSLKPFKCTVCKKSLSRVDYLKCHVKKCA
ARRLLEGGGKLGGDSGASGDQPSRSQNSTTGSGGKNGLPPLLRVKKEPVDGGEGPGQDVE
RRQHKCPHCHVTTMSRQSLVKHLCLHAGVSPFHCSRCGRGYNRKDRWRLHESYCTGQGGA
AAAAGRQWKRSKDGRFMKQTGTGGEPPAGQYQCKFCTKSFPGPKGLRRHILTHTDVKPYR
CEKCESCFTRYDYLKVHLLRCRGQRRWARAVERGAREEPADRTREEEETAGQKPGDDRLR
KKAPEGSGGSKDGEPVRCTYCRRTFDRRSDLGRHVAMMHLTSKPFRCTWCAHTFTQQRGL
RFHQKTCKSVKPVASAAPAAGGKVNPKRVGLRSAQQEPRKAGSESPGTKTTPQGTGGRVG
VGKTCRETSKLLQRIQTHYASPYECQFCAKRCISKMVLIRHLRIHTGEKPFGCGRCGQRF
IRKDYLKNHLTKCSLRREGAGTRESALCDKCGDFFASQSSLKAHQKSCVVLLKPPESASK
TGASAAAAEIQQVFICVECGEGFQSFVELRSHLQHEHWSRVQSDEPPQGSERQAKVNGLL
PRAVTVKQEPEDDGYELPAKSAENEPRKDTPVPLPAPVLPPSSTPNKRAAAAANTTCPYC
FMKFRHNGSLVTHIRVHTGEKPFVCACSTAFHRKDYLLKHAKICKEARPFRCANCHQDFN
RTDLLKRHLRRCAAPTPKGGAPRAEGGPVKVKEEPQNEDDWLKIYSKNTVLVINSGPKAT
GTGVLQTQFSCKIGDQQNGETEAPAPSSSPPPPPSPPPLQNHGTPLAGRKRCGLDLASPS
ETPRKKLECNLCGESFDLHKQLQRHKREHSGLGPYRCAQCPRTFHYPSDLKRHTHIRSFG
KRPNKDPAETVTHTCIFCEKQFSSRKLLFRHREVHRHQIRFQCTRCEKSFTIRKSYLQHR
RKHLSEEEEEERDKGKSRSYEDDSDSEPCLPCHVCGKSFASVAALEEHQRSHLGKQPHEC
GQCGQSFLQESQLRHHQRSHESPFQCGPCGRGLPSLLALRKHQKTHNVQRPIPCPQCPQR
FMYQSHLRNHLETHSGEPFPCDLCGRTFAWKSTRDTHRKTHTLQETGADQPREESAAPSQ
PPPPSATAPPPSPPPPSPSSKDRSARATGGLQRELAQLQQPGRGGEEWRFSCQICGKGFR
YRSKLAEHQGHHGAERPFTCVDCGRRFDQGFQLQEHRLSHAPRKPEQKEEEEKEKPYQCH
TCNKRFQRKSNFTVHQKSHVEPTLYECTECGGGFQGMGAFKKHRCVRKKKKDSSHRQSAG
VQLGSDSDEEGFSSRFPCHVCGKSFSTFRKLEEHQRYHTGERPFECQECGKRFYQAGHLS
KHRKTHGRQHQCEQCPRSFSTLQAFLQHQGLHDSAPPRRRPLRHQCPLCLKWFVSPSDLA
RHERTHAPKGQPVFQCDVCWMTFGQAAQLRVHRESHVGEVVYECPDCDMVFASFQLLEQH
QSVHQDGAGGSSLNGSPPDPQSLGASGYLSADHAHGGGAVVMAQV
NT seq
8598 nt
NT seq
+upstream
nt +downstream
nt
atggcacgcggcgcgggaaccgattcaacctggcaggcgaacgccgtgatgggagaggag
tccacatccagcggctctccccagaacctgccaccgatctgcagccctgacgaggacctg
acccggcacatcgagaacctgattgcgatcgagctgggcgcctgctgcctgtccgacctg
gagaactccgtcgacttctgcgacccaagcctgggggtcgaggactatccttccactggg
gagatggaaaaaaccctcaccgtggccacggatggcttgtcacaactttctcgccctgct
gatgctcccggcttgcctggggaaagcgtggacggtaaatcgaacagcggcgtgtcttct
tcgaccacgtggctcgctgccagcttgctggacccggcttcctcctcggcaggctgctgt
cccgggaaaggaatcgtcccgggtctgaccggccacttaataaactttgcggagcagagc
ggaggggagtttcccgcgggacagagggacgcgcccccccacaacgacgcggtgggcttc
ccctcctggcacgccagcgtgctggagccgtattccgatgtcagcagctgctctggggat
gaagcgcaggatatagaggccgggcgagacgggagtctgacgagggaggggtgggattcc
agccccccctccccggaagacggcggaagaggtggaagaaccgggggcgactcgccggct
tttgacgccgataacgaggaggagtctgacggcagcggctctccggcgaatcccgccact
cctcgcacggctgacggaggcggctttccatgccagcaacaggaaaaaaacgatgccgtg
aaaccacaggactctgagagctccccagatagtgaggctcacccagaagggggttcgtcc
tccgaaagcagagacagattgtcggagccgcagcagaacgatcgtcacacggggggcggt
atactggaagagtattcgaacatcggcagccctgtggaggatgtggctgaaccgtccgct
ccctgtaatatagacggtgtacgggacaatcaaacacaacagatactggtgcctgtctcc
aatcacgtcgccatctcctcggagatagaaatagaaacagccagcggcccagggcacact
cccatccaggctacgcaaggactccaggaagctgaattgaatgcaagcaagttgtgggac
aagccacccgcacacgccgaaaactctctgcaccactcacccatgcgtgaagcgactgca
gccccagatgatgcaggactccttgctgctgctgctacagcagagctgccgggacgctac
tcggatgtgagcagctgttcagaggacgagacgggcagcccaacccaccgtgccgcagag
gacgatccgccccagcagcgcggagaaaacccggccagggaaactgactcgggaccccgt
accggagaaggtccgacagcttcgaacgcagaagatccagttccatgtgacggaccactg
ggttggggctggaatgcacccggctctccagaggcagcgtccgacgcagatcccagcagt
ccgctcctgcatgatggaagtttaccagatcaggaattggaggagccagagctcaaggaa
agcttggcggagaccagcgagtcgcaggagccgaaagagatggaagactggaatgcctgt
ctgctggagggggagcccgagcgggaatcggaggactctgcagccggcgtgatgtccgaa
gagaaggaggcgtacagccggagaggctctgaggagaaagtcggtggctctcaatacatg
gacctggcttcctccctgagcatggggaggattctctttcccgttgtcgcgctgaaaaga
ccccgcggccccggcacccaggaatcctacgactgcgacgcgtgtggggagagtttcaac
aacgcggaggccgtcatcgcacaccaccacggagcccacaccgagcagcggctgtacaac
tgccgggagtgcgccggcttcttcaccagcaagagcttcgtggagagtcaccggtgcagg
gaaccaccggactccggaccgccgcccggcttctcctccgggaagaagtctgacagcacg
agagagcacctgaagaagtgccgtatggcagacggacgctacaagtgtagccactgcagc
gagaccttcgtgaagacctacgacctgtacagccacgagcggaagcacacagggaccacg
cctttccgctgccaggactgcggacgctatttctcccaggtgcccaatctcaaacggcac
atcgagaccgccagggcaggggggcggaagaccgggtgcgtcatgggaaacggaacgaag
aaaccggacgaggcgcctgtgaaaaaaaggcgtcctggccccaggtctttccaggagtcg
cagcagcggctcctggcagagacaacggcgaagaatgacctctacgagaattgctcccgc
tgctatgtcaggctggtcgatttcaggaagcagaagggtcgcaggaatgcgcagcaggcg
ctgcagggaagctgcccgctggccgggaagggtccgtacgagtgcacggtgtgcgggctg
agctttcacgtgaggaactcgctgctcgcgcacagcctggcgcacggggacgagcctccc
ttcaggtgcttcgcctgcgtcaagacgttcgagacgtcgtccaacagagcgcggcacgtc
gccatgaactgccgggccggggagggcaagcaggggcagctgctggcgaagatgaagcgg
gccagggacgtcgacgccaacctgggtccctacaagtgtcccaggtgccccatgattttt
aaatactccttcaaccggattcggcacgtgcggcaccagtgcccctactccttggcaaac
aaggcggacctggtggtgcccaaccctaacggcacgggcgacctgtataagtgcgccctg
tgcccccagctcttcacccacccctcgaacaggacccgccacatgcgcctgagctgcaag
aacgctcgcgggaagcgggacgggcagaaagccggggcgcagaaatccgtggccgcggct
gcagaacgcatgaggagagcgaaaccgcaggacagctccgtcttccgcacctccggggac
cccgcccagccgtacgcctgcgagttctgccagaagaagttccggacggggcaggagtgc
cgggtgcaccgccgcatacacaccggggagcggccttaccgctgctccttctgcgggctc
cggttcatccagtcgggccacttgaggggccacctgcgcgtccacggcacgaggtaccag
tgcgacaagtgcaagaaggtgtgcgccacgctcgctgagctgttcaaacacaagagggtg
caccggaaaggaggaccccagggggacgaggcggaggcgaagaggaagggggtccccgac
gagggacaaggcgaggacaggctgtatgagtgcgagacctgcaagaagcgcttctccctg
gccagccacctgcagcgccacttgcgctcccacgcggggcagaccgcgttcaagtgctcg
gagtgcggccaggttttcggcaccgcgcagtcgctgaagctgcactggcacaagcaccgc
tccttcaacctgacgtgcaggttctgcagcaaagcgttcagccagagagggagcctggtc
cggcacattcgcatccacacgggcgagaagcccttcccttgcagccggtgcggggaattc
ttcccgcgctgggacgcccgtaaagtgcaccagcttaagtgcgcgggcagcatggcggca
gcggcaagcgagagcggccctgaggaaaaaaaagcgacgacgaaggggaaggaggcgcgc
agcggagcggttcggaagcttgcgggagcgagcgataacagatgcaagatctgtctgaag
agctacagcagcttccacagcctcagccggcacctcaacacccactcccctgtcaaccga
tacttctgcagcaagtgcaacaagggcttctaccggaaagaccaccacctgagccacgag
gtgaggtgcaacggggtcccgaggaagccgcggggctccctgaaacccttcaagtgcacc
gtctgcaagaagagcttgagccgggtcgactacctgaagtgtcacgtgaagaagtgcgcc
gctcgccggctcctcgagggaggggggaagctggggggcgactccggtgcgtcgggagat
cagccttcccggtcccagaacagcacgaccggcagcggcggaaaaaacgggctgccacct
cttctccgcgtgaagaaagaaccggtggacggaggcgaaggtcccgggcaggatgtcgag
cgtcggcagcacaagtgcccgcactgccacgtgaccacgatgagccggcagagtttggtg
aaacacttgtgtttgcacgccggggtgagcccgttccactgcagccggtgtgggaggggc
tacaaccggaaagacaggtggcgcctccacgagagttactgcacgggtcagggtggcgct
gctgctgctgctgggaggcaatggaaaagaagtaaagacgggcgcttcatgaagcagacg
ggcacaggaggagagccgccagccgggcagtaccaatgcaagttctgcaccaagagcttc
ccgggaccgaaagggttgcgccggcacattctgacccacacggacgtcaagccgtaccgc
tgcgagaagtgcgagagctgcttcacccgctacgactacctcaaagtgcacctgctgagg
tgtcggggccagcgcaggtgggcgagggcggtggagcgcggggcgagggaggaacccgcc
gacagaacccgggaggaggaggagacggcaggacaaaaacccggcgacgaccgcctgcgg
aagaaagccccggagggcagcggcggcagcaaggacggcgagccggtgcgctgcacctac
tgccggaggactttcgacaggaggtcggatttggggaggcacgtcgccatgatgcacttg
accagcaaacctttcaggtgcacgtggtgcgcacacaccttcacgcagcagagaggcctc
cgcttccatcagaagacgtgcaagtccgtcaagcctgtagcctctgcggctcctgccgcc
ggggggaaagtaaacccgaaacgcgtcggactgcgctcggcgcagcaggaacctaggaaa
gcgggatcagaatcccccgggacgaaaaccaccccacaggggactgggggaagggtcgga
gtcggcaagacttgccgggagacctccaagctcctgcagaggatccagacgcactacgcc
agtccgtacgagtgccagttctgcgccaagcggtgcataagcaaaatggttctgatccga
cacctgcggattcacaccggggagaagcctttcgggtgcggccgctgcggccagcgcttc
atccggaaggactatctgaaaaaccacctgacaaaatgcagcctgcggcgagagggagcc
gggacccgggagtccgcgctctgtgataagtgcggagatttcttcgcctctcagagcagc
ctaaaagcccatcagaaaagctgcgtggtgctgctgaagcccccggagagcgcgagcaaa
accggcgccagcgcagccgctgcggaaatccagcaggtcttcatctgcgtggagtgcggg
gagggctttcagagtttcgttgaactccggagccacctgcagcacgagcactggagccgc
gtccagtccgacgagccgccgcaggggagcgagcggcaggcgaaggttaacgggcttctc
ccccgcgccgtgaccgtcaagcaagaacccgaggacgacgggtatgaactgccggcgaag
agcgctgaaaacgagccgaggaaagacacgcccgtcccgctccccgctcccgttctccct
ccctcctcgacgccgaataagagggcagcggcggctgcaaacaccacctgcccatactgc
ttcatgaaattccgtcacaacgggtccctcgtcacccacatcagagtgcacacgggcgag
aagccgttcgtgtgcgcgtgctcgacggcgttccaccgcaaggactacctgctgaagcac
gccaagatctgcaaggaggcgaggcctttccggtgcgctaactgtcaccaggacttcaac
cggacggacttgctcaagagacacttgaggagatgcgccgcccccacccccaagggaggg
gccccccgggccgaggggggaccggtgaaggtgaaggaggagccgcagaacgaggacgac
tggctgaagatctactccaagaacacggtgctggtgatcaacagcggccccaaagccacc
ggcactggagtcctgcagacacaattctcctgcaaaatcggggaccagcaaaacggtgag
acagaggcccccgctccttcctcctctcctcctcctcctccttctcctcctcctctgcag
aaccacggcactcccctcgccgggcggaagcgctgcgggctcgatctcgcgagcccatcg
gagacgccgaggaagaagctggaatgcaacctgtgtggcgagagcttcgacttgcacaag
cagctccagagacacaagcgcgagcactcggggctcggcccttacaggtgcgcgcagtgc
ccccggaccttccactacccctccgacttgaagcgccacacccacatcaggagcttcggc
aagagacccaacaaggaccccgccgagacggtgacccacacctgcatcttctgcgagaag
cagttttccagtcggaagctgctcttcagacacagggaggtccatcggcaccagatccgg
ttccagtgcacccggtgtgagaagagcttcaccatccggaagtcttacctgcagcaccgg
cgcaaacacctgtcggaggaggaggaggaggagagagacaaaggcaagagccggtcctac
gaagacgattcggattccgagccttgcctcccgtgccacgtctgcgggaagagcttcgcc
tccgtggcggcgttggaggagcaccagcgcagccacctgggcaagcagccccacgagtgc
gggcagtgcggacagagcttcctccaggagtcccagctgcggcatcaccagcgcagccac
gagagcccgttccagtgcggcccctgcggacgggggctcccgtccctgttggcactccgc
aagcaccagaaaacccacaacgtgcagcggcccatcccctgcccgcagtgcccccagcgc
ttcatgtaccagtcccacctgcgcaaccacctggagacgcactcgggggagccctttcct
tgcgacctgtgcggcaggaccttcgcctggaagagcactcgggacactcaccggaaaacg
cacacgctccaggagaccggggctgaccaaccacgggaagaaagtgcagccccatctcaa
ccgcccccgccgtccgccactgccccccctccgtctccccctcctccttctccatcatct
aaagacagatcggcccgagccacgggggggctccagagggagctggcccagctgcagcag
cccggaagaggaggagaggagtggaggttctcctgtcagatctgcggcaagggtttccgg
taccggagcaagctggctgagcaccaggggcaccacggcgccgagcgacccttcacctgc
gtggactgcggccgccgcttcgaccaagggttccagctccaggagcaccggctgagccac
gcgcccaggaaaccagagcagaaggaggaggaggaaaaggagaagccgtaccagtgccac
acctgcaacaaacgcttccagcgcaagagcaacttcacggtgcaccagaagagccacgtg
gagcccacgctgtacgagtgcacggagtgtggcggcggcttccaggggatgggggccttc
aagaagcaccggtgcgtccgcaagaagaagaaggactcctcgcaccggcagtcagccggg
gtccagctgggatcggactccgacgaggaagggttctcttcccggttcccatgccacgtc
tgcgggaaaagcttctcgaccttccggaaactggaggagcaccagcgctaccacaccggg
gagcggcccttcgagtgccaggagtgcggcaagcgcttctaccaagcggggcacctgagc
aaacaccggaagacccacgggcggcagcaccagtgcgagcagtgcccccgcagcttcagc
acgctgcaggccttcctgcagcaccagggtctccacgacagcgcgcccccgcgccgccgc
cccctccgccaccagtgcccgctctgcctcaagtggttcgtgtcgccctccgacctggcg
cgccacgagaggacccacgcccccaagggccagcccgtgttccagtgcgacgtgtgctgg
atgaccttcggacaggctgcacagctgagggtccaccgcgagagccacgtgggcgaggtg
gtgtacgagtgcccggactgcgatatggtcttcgcctccttccagctgctggagcagcac
cagagcgtgcatcaggacggggcgggggggtcaagcctgaacgggagccccccggacccc
cagagcctcggcgcgtcgggctatctctccgcggaccacgcccacgggggcggggctgtt
gtgatggcgcaggtttga
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