Polyodon spathula (Mississippi paddlefish): 121304919
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Entry
121304919 CDS
T07273
Symbol
exosc5
Name
(RefSeq) exosome complex component RRP46
KO
K12590
exosome complex component RRP46
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121304919 (exosc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121304919 (exosc5)
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
121304919 (exosc5)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
121304919
NCBI-ProteinID:
XP_041092283
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All DBs
Position
40:2669740..2672322
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AA seq
215 aa
AA seq
DB search
MAHSGPVLREFGCEHSLLSRPDGSASFVQGNTTVLAGVYGPAEVMVSKESFDRATLEVTL
KPKVGLPGVAERSKEQCIRETCAAALLTRLHPRTSITLSLQTVHDDGALLACCLNAACMA
LMDAGLPMHCLFCGVSCAIDQQGTIRLDPTAREEKESRAVMTFALDSTDCRVMMSSTKGS
YTAAELQQCIAVCQRASQSIFQFHRDSVSRRYCKA
NT seq
648 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacagcggtccggtgctgcgggagttcggctgcgagcacagcctcctttcccgg
cccgacggctcggcctcgttcgttcagggtaacaccacagtgctggctggggtgtatggt
cctgcagaggtcatggtcagtaaggagagttttgaccgtgcgacgctggaggtcactctc
aaacccaaagtgggcctgccaggagtggcagagcgcagcaaggagcagtgtatcagagag
acctgtgcggctgccctactcaccagacttcaccctcgaacctccatcacactgtccctg
cagactgtgcacgacgacggggctctcctggcatgctgtctgaacgctgcctgcatggcc
ctgatggacgcagggctgcccatgcactgcctgttctgtggagtgagctgtgccatcgac
cagcaggggaccatcagactggaccccacagccagggaggagaaggagagccgtgcagtc
atgacctttgccctcgacagcactgactgcagggtgatgatgtcatcaaccaagggttcc
tacacagccgcggagctgcagcagtgtatcgcagtgtgtcagagagcctcgcagagcatc
ttccagttccacagagactcagtcagcagaagatactgcaaagcgtga
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