Polyodon spathula (Mississippi paddlefish): 121305498
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Entry
121305498 CDS
T07273
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D-like
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04010
MAPK signaling pathway
pspa04020
Calcium signaling pathway
pspa04260
Cardiac muscle contraction
pspa04261
Adrenergic signaling in cardiomyocytes
pspa04270
Vascular smooth muscle contraction
pspa04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121305498
04020 Calcium signaling pathway
121305498
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
121305498
09153 Circulatory system
04260 Cardiac muscle contraction
121305498
04261 Adrenergic signaling in cardiomyocytes
121305498
04270 Vascular smooth muscle contraction
121305498
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
pspa04040
]
121305498
Ion channels [BR:
pspa04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121305498
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
GPHH
Ca_chan_IQ
PKD_channel
FAM176
Motif
Other DBs
NCBI-GeneID:
121305498
NCBI-ProteinID:
XP_041093072
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All DBs
Position
43:2998869..3042376
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AA seq
2051 aa
AA seq
DB search
MRDSQDSPRSDAQEEGGGPWQRSMEMNGVSREGGEGGKGAGVMNGTDTLNSTASSSTATG
PRKKPQYGKNKVQGSTAANRAPRALFCLRLNNPIRQAALTIVEWKPFDVFILLAIFANCV
ALGVSIPFPEDDSNSTNHDLEQVEYVFLIIFTIETFMKILAYGLVMHPSSYIRNGWNLLD
FVIVIVRCVTLGERAALTRGPCASIPRAGLQIVLNSIMKAMVPLLHISLLVLFVIIIYAI
IGLELFIGKMHKTCFYTDTDINVEDDPSPCAFAGHGRQCLVNGSECRGKWAGPNGGITNF
DNFFFAMLTVFQCITMEGWTDVLYWMNDAMGYELPWVYFVSLVVFGSFFVLNLVLGVLSG
EFSKEREKAKARGDFQKLREKQQMEEDLSGYMDWISQAEDIEPENEEEEEEQGEEGKRRV
TLADLADKKKGKLSWFSHSNETHASLPTSETASENTECVEEEHADCYAICTARMMKHRVC
WQLHWWNRACRRRCRVAVKSVTFYWLVLLLVFLNTLTIASEHYNQPDWLGQIQDIANKVL
LSLFTVEMLLKMYSLGLQGYCVAFFNRFDCFIVCGGIVETFLVELEVMPPLGISVLRCVR
MLRIFKITRHWASLSNLVASLLNSMKSIASLLLLLFLFIIIFALLGMQLFGGKFSFDETQ
TKRSTFDSFPQALLTVFQILTGEDWNVVMYDGIMAYGGPVFPGMIICIYFVILFICGNYI
LLNVFLAIAVDNLGDADCINADTKKGKEVEKAEGEEANEEVKVNVDEDEEEGSEGEGEDG
VSEIHSSNINKLADFAPKEKIVPIPEGTAFFCLSRTNCFRVACHTLINHHIFTNLILVFI
ILSSISLATEDPIRAHSFRNQVLGYADYAFTSIFTVEILLKVTVYGVFLHKGSFCRNWFN
LLDLLVVSVSLISFFLHSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIG
NIMIVTTLLQFMFACIGVQLFKGKFYRCTDEAKHTPDQCKGSFIVYKDGDVLHPMVRERV
WHNSDFNFDNVLAGMMALFTVSTFEGWPALLYKAIDANAENEGPVYNYRVEISIFFIIYI
IIIAFFMMNIFVGFVIITFRDQGEQEYKNCELDKNQRQCVEFALKAQPLQLYIPKNKLQY
KFWSMVNSTGFEYIMFILILLNTITLAMQHYEQSDSFNYAMDLLNMIFTGLFTVEMILKL
LAFRPKHYFMDAWNSFDALIVVGSVVDIAVTEFNNGGDLGHESAEDSSRISITFFRLFRV
MRLVKLLSKGEGIRTLLWTFIKSFQALPYVALLIAMIFFIYAVIGMQMTFGKIAMQDGTQ
INRNNNFQTFQQAVLLLFRTATGEAWQEIMLASLPGKRCDPESDYEPGEEFTCGSNFAIV
YFISFFMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKH
LDVVALLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVTFNATLFALVRTALKIKT
EGNPEQENEALRIVIKKIWKRMKPKILDEVIPPPEGEEVTVGKFYATFLIQDYFRKFRKR
KEKGMLGEPEHSNSNSLQAGLRTLQDLGPEIRLAMSCDMEEEEEEEEEAGPAEKDDAHYK
NDSVFSNHSDQHPTGSANGGGGGAARGRPARRKTISTVRVSVVSLHKSQPAGQTIKHSDT
GGAEEPTATRSHSQWPPRAVCNRRDSGEGDPTASRREEVVLEELGEETYSREQGYYSREE
DSESTASRERQLSADDPPLYPGLREHIYDGQVPSPALDGGHYGNGYGEGQPAARRRLLPP
TPTGRKPAFNIQCLRRQGSNDDIPIPGTYHQNSPPCRTRTQTYGSYDSRRSSSHSSVCSS
HSWATPGPSRGRLFYAPLILVEEGGGTALWVGEGKKPGGGSSSLPPSARSPAWYTSTGGA
GSVSHPYTAYTSLRVPTHLQQSDRDKRGSADSLVEAVLISEGLGLYAKDPKFVAFAKREI
ADACHMTIDEMESAASDLLKQNIPSGGRGGGFLQHTEMELSSLGQLYSDEEPMRSKEEEE
LADEMTCEASF
NT seq
6156 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgactcccaggacagccccaggagcgatgcccaggaggaggggggcgggccctgg
cagaggtccatggagatgaacggggtgagcagggagggaggggaaggaggcaagggggcc
ggggtgatgaacggcacagacaccctgaactccaccgccagctcctccacagccacgggg
cccaggaagaagccgcagtacgggaagaacaaggtgcaagggagcacagccgccaaccgt
gccccacgagccctcttctgcctgaggttgaacaacccaatacgccaggcagccttgacc
atcgtggagtggaaacccttcgatgtcttcatcctgttggccatctttgcaaactgcgtg
gcgctgggcgtgtccatccccttcccggaggatgactccaactcaaccaatcacgacctg
gagcaagtggagtacgtcttcctcatcatcttcaccattgaaaccttcatgaagatcctg
gcgtacgggctggtcatgcaccccagctcctacatccgcaacggctggaacctgctggac
ttcgtcatcgtcatcgtgagatgtgtgaccctcggcgagcgtgcggctctgacccgtggc
ccctgtgcttccattccccgcgcaggtctgcagatcgtgctgaactccatcatgaaggcc
atggtccctctgctgcacatctccctgctggtcctgtttgtcatcatcatctacgccatc
ataggcctggagctcttcataggaaagatgcacaagacctgcttctatactgacacagat
ataaatgtggaggatgacccctccccctgtgccttcgcgggtcacggccggcagtgcctg
gtcaacgggtcggaatgccgtgggaagtgggcggggcctaacggtggcatcacaaacttc
gataacttcttcttcgccatgctgaccgtgtttcagtgcatcaccatggagggctggact
gacgtgctgtactggatgaacgatgccatgggttacgagctgccctgggtttacttcgtc
agtctggttgtcttcggctctttcttcgtactcaaccttgtattgggtgtgctgagcgga
gagttctcgaaggagcgagagaaggcaaaggcacggggagatttccagaagttgagggag
aagcagcagatggaggaggacctgagcggctacatggactggatcagccaggcagaagac
atcgagccagagaatgaggaggaggaggaggagcagggggaggagggcaagagacgcgtg
accctggctgacctggctgataaaaagaaagggaagctgagctggttcagtcattccaac
gaaactcacgcgagtctgcccaccagtgagacggcatccgagaacaccgagtgcgtggaa
gaggagcacgcagactgctatgccatctgcacggcgagaatgatgaagcacagagtctgc
tggcagcttcactggtggaaccgcgcttgcaggaggaggtgtcgggtcgctgtgaagtcc
gtgactttctactggctggtgctgctcctggtgttcctgaacacactgaccatcgcatcg
gagcactacaatcaacctgactggctggggcagatacaggacatcgctaacaaggtgctc
ctgtccctgttcaccgtggagatgctgttgaagatgtacagtctggggctgcagggttac
tgcgtggccttcttcaaccgctttgactgcttcatcgtgtgcggtggcatcgtggagacc
ttcctggtggagctggaggtcatgcccccgctcggcatctctgtgctgcgctgcgtccgc
atgctgcgcatattcaaaatcaccagacactgggcctctctctctaacctggtggcgtct
ctcttgaactcgatgaagtccatcgcctccctgctgctgctgctcttcctcttcatcatc
atcttcgccttgctcgggatgcagctgttcggaggcaagttcagctttgatgagacccag
actaagaggagcacgtttgactccttcccccaggctctgctcactgtcttccagatcctg
accggtgaagactggaacgttgtcatgtacgacggaatcatggcgtacggaggcccggtt
ttcccgggaatgatcatctgtatttactttgtcatcctcttcatctgtggaaactatatc
cttctcaatgtgttcttggccatcgctgtggacaacctgggtgacgccgactgcatcaac
gcggacaccaagaaggggaaggaggtggaaaaagctgagggagaggaagccaacgaagag
gtcaaagtgaatgtcgatgaggacgaagaggaaggtagcgagggtgaaggggaggatggt
gtatcggagatccacagctctaacatcaacaagctggccgacttcgcccccaaagagaag
atcgtgcccatcccagaggggactgccttcttctgcctgagccggaccaactgttttcga
gttgcctgccacaccctgattaaccatcacatcttcaccaacctcatcctcgtcttcatc
atcctgagcagcatctcattggctactgaggacccaatcagagcgcactccttcagaaac
caggtgctgggttatgccgactatgcctttacgtccatcttcactgtggaaatcttactc
aaggtgacagtgtacggggtgtttctgcacaagggctccttctgcaggaactggttcaat
cttctggatcttttggttgtcagtgtgtccctcatctccttcttcttacactccagcgca
atctctgtagtgaagatcctgagagtgctgagagtgcttagacctctgagagccatcaac
agggccaaggggctcaagcacgtggtacagtgtgtgtttgtggcgatcaagaccatcggg
aacatcatgatagtcaccactctgctgcagttcatgttcgcctgcattggagtgcagctc
ttcaagggtaaattctacaggtgcactgatgaagccaagcacactccagaccaatgcaaa
ggctccttcatcgtctataaggatggtgatgtcctgcaccccatggtgagggagcgtgtc
tggcacaacagcgattttaacttcgataacgtgctggctggcatgatggcgctgttcacg
gtgtccaccttcgagggctggcccgcgctcctgtacaaagcgatcgatgcaaacgcagag
aacgagggcccagtctacaactaccgggtggagatttccatcttcttcatcatctacatc
atcatcatcgctttcttcatgatgaacatcttcgtgggcttcgtcatcatcaccttccgg
gaccagggggagcaggagtacaagaactgtgagctggacaagaaccagaggcagtgtgtg
gagtttgccctgaaggcccagcctttgcagctctacatccccaagaacaagcttcagtac
aagttctggtccatggtcaactcgaccgggttcgaatacatcatgttcatcctgatcctg
ctcaacaccatcaccctggccatgcagcactatgaacagtccgattcctttaactatgcc
atggatctcctgaacatgatcttcactggtctcttcactgtggagatgatcctcaagcta
ctcgccttccgacccaaacactatttcatggatgcgtggaactcgtttgacgctctgatc
gtggtcggcagtgtggtggatatcgccgtcactgagttcaacaacggaggtgatcttggt
cacgagagcgcggaggacagctctcgaatctccatcactttcttccgtcttttccgagtg
atgcgattggtcaagctgctgagcaagggggagggcattcgaaccctgctgtggaccttc
atcaagtccttccaggctctgccgtacgtcgctctcctcatcgcaatgatattcttcatc
tacgctgtcattggaatgcagatgacgtttggtaagattgccatgcaggacggcactcag
atcaacaggaataacaactttcagacattccaacaagctgtgctgcttctcttcaggaca
gccacaggagaggcctggcaggagatcatgctggccagcctgccggggaagcgctgtgac
cccgagtcggactacgagccaggggaggagttcacctgcgggagcaacttcgccatcgtc
tacttcatcagcttcttcatgctgtgcgccttcctgatcatcaacttgttcgtggccgtc
atcatggataactttgactatctgacgcgtgattggtcgatcctggggccgcaccacctg
gacgagttcaagaggatctggtcggagtacgatcctgaggcaaagggtcgtattaagcac
ttggatgttgtggctttgctgcgcaggattcagccccccctgggatttgggaagctgtgc
cctcatcgtgttgcctgcaagaggctggtggcgatgaacatgcctctgaacagcgatggc
acggtcaccttcaacgccacgctcttcgctctcgtcaggaccgcgctgaagatcaaaacc
gaaggtaacccagagcaggagaacgaggcgctccgcatcgtcatcaagaagatctggaag
agaatgaaacccaagatcctggacgaggtcattcctccacctgagggcgaggaggtgact
gtgggaaaattctacgccacgttcctgatccaggactacttcaggaagttccgcaagagg
aaggagaaaggcatgctgggagagccggagcacagcaattccaacagtctgcaggctggg
ctgcgcactctgcaggatctgggcccggagattcgcttggccatgtcatgtgacatggag
gaggaggaggaggaggaggaggaggcggggccagcagagaaagacgacgcccactataag
aatgacagcgtcttctcaaaccactctgaccagcaccccacgggcagcgccaacgggggc
ggggggggagcagctcgggggaggccagcccgcaggaagaccatcagcacagtccgggtg
tccgtcgtcagcctgcacaagagccagcccgcaggacagaccatcaagcacagcgacacg
gggggggcagaggagcccacagccacacgcagccacagccagtggccccccagagccgtc
tgcaacaggagagactccggtgagggggaccccactgcgtctcggagggaggaagtggtc
ctggaggagctgggagaggagacttactctagagagcagggatactacagcagagaggag
gactctgagagcacagcgtccagagagaggcagctcagcgcagatgatccgcccctctac
cccgggctcagagaacatatctatgatggacaggtgccgagccccgccctcgacggcggt
cactatggcaacggctacggcgagggacagccagcggcgaggagacgcctgcttcccccc
acacccacaggtcggaagcctgccttcaatatccagtgtttgaggagacagggaagcaac
gatgacatcccaatcccaggaacctaccaccagaactcaccaccctgccgcacacgtaca
cagacatacggcagctatgactcccggcgcagcagcagtcattcctctgtgtgctcgtct
cactcctgggcgaccccgggtccgagccgcggccggctgttctacgcgcccctcatcctg
gtggaggagggcgggggcacagcgctctgggtgggggaggggaagaagcccgggggaggg
agctccagcctgccaccctcagctcggagcccagcctggtacacctccactgggggtgcg
gggtccgtgagccacccctacacagcgtacaccagcctgcgcgttcccacacacctgcag
cagagcgaccgggacaagagaggcagcgcagacagcctggtggaggctgtcctgatctca
gagggtctgggtctctatgcgaaggaccccaagttcgttgcgttcgcgaagcgcgagatc
gccgacgcgtgtcacatgaccatcgatgagatggagagcgccgccagcgacctgctgaaa
cagaacataccaagcgggggcaggggcgggggcttcctgcagcacaccgagatggaactg
tccagcctgggccagctgtatagcgacgaggagccaatgagaagcaaagaggaggaggag
ctggctgacgagatgacctgtgaggcttcattctga
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integrated database retrieval system
