Polyodon spathula (Mississippi paddlefish): 121315468
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Entry
121315468 CDS
T07273
Name
(RefSeq) histone deacetylase 2-like
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03082
ATP-dependent chromatin remodeling
pspa03083
Polycomb repressive complex
pspa04110
Cell cycle
pspa04330
Notch signaling pathway
pspa04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
121315468
03083 Polycomb repressive complex
121315468
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
121315468
04350 TGF-beta signaling pathway
121315468
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121315468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pspa03036
]
121315468
Enzymes [BR:
pspa01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
121315468
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
121315468
HDAC complexes
Sin3A-HDAC complex
121315468
BRAF-HDAC complex
121315468
REST complex
121315468
SHIP complex
121315468
MiDAC complex
121315468
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
121315468
Heterochromatin formation proteins
Other heterochromatin formation proteins
121315468
Chromatin remodeling factors
NuRD complex
121315468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
121315468
NCBI-ProteinID:
XP_041105517
LinkDB
All DBs
Position
5:5749270..5760848
Genome browser
AA seq
489 aa
AA seq
DB search
MAYTHQGGSKKKVCYYYDGDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ATVEEMTKYHSDDYVKFLRSIRSENMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSA
AGAVKLNRQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
RIFKPVLSKVMEMFQPSALVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKTFNLPLLML
GGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTQEY
LDKIKQRLFENLRMLPHAPGVQMQAIPEDAIADDSGEEDEEDPDKRISIRASDKRIACDE
EFSDSEDEGEGGRRNVTNHKKSAKRARVDEDKKETEEKKAEVSEEDKSRNSVSEKTDDKS
VKTEQPSNA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggcatacacgcatcagggaggcagtaagaagaaagtctgctattactacgacggtgac
attggaaactactactatggacagggtcaccctatgaaacctcacagaatacgcatgact
cacaacctcctgttaaactatggcctttacagaaaaatggagatatacagacctcacaaa
gctacagtggaagaaatgacaaagtaccacagtgatgattatgtcaaattcctcagatcc
ataagatcagaaaatatgtctgaatacagcaaacaaatgcaaagatttaatgttggtgaa
gactgccctgtgttcgacggattgtttgagttttgccagttgtccacaggtggctctgct
gctggagcagtgaaattgaacaggcagcagactgatattgcagtcaactgggctggagga
cttcaccatgctaagaagtctgaggcttcaggtttttgctatgtgaacgatattgtcctt
gccatcctcgagctactcaaatatcatcagagagtgttgtacatcgatatcgacattcat
cacggggatggtgttgaagaagcattctatacaacagaccgtgtcatgacagtttcgttc
cataaatatggcgaatacttccccggtactggtgacctgcgggatattggtgcagggaag
ggcaaatactatgctgtcaactatccactgagggacggcatagatgacgaatcatacgaa
cggatttttaaacctgtattgtcaaaagttatggaaatgtttcaacccagtgctctggtg
ctgcagtgtggagcagattcgctgtctggagataggcttggatgcttcaatctcacaatc
aaaggtcatgctaaatgtgttgagtatatgaagactttcaacctgcctctgctgatgttg
ggaggagggggctacactattcgtaatgttgctcggtgttggacatacgagactgctgta
gcactagattcagaaattcctaatgagcttccctacaatgattattttgaatacttcgga
ccagattttaaattgcacatcagtccttccaacatgacaaaccagaacacccaagagtat
ttggacaagatcaagcagcgcttgtttgagaacctgcgtatgctgccccatgccccagga
gttcagatgcaggctattccagaggacgccattgcagatgacagtggagaagaggatgag
gaagacccagataaacgcatttcaataagagcatctgataaaaggatagcctgtgatgaa
gagttttctgactctgaagatgaaggagaaggtggaaggagaaatgttacaaatcacaag
aaaagtgcaaaaagggctcgagtagacgaagacaagaaggaaacggaggaaaagaaagcc
gaagtgagtgaggaagacaaatctagaaatagtgtctcagaaaagacagatgacaaaagc
gttaagacagagcagccaagtaatgcttga
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