Polyodon spathula (Mississippi paddlefish): 121322169
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Entry
121322169 CDS
T07273
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121322169
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121322169
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121322169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
121322169
NCBI-ProteinID:
XP_041117676
LinkDB
All DBs
Position
10:complement(34009925..34071510)
Genome browser
AA seq
1506 aa
AA seq
DB search
MVNFMKSRTFLFFAVFVVHVFVVKCQGSGDELGCSKDGQTYTNRDIWKPQPCQICVCDSG
TILCDEIQCEEILNCEKPVIPFGECCPICQDGEGGDRGDGGRGGGGNEGSAGRGYKGQKG
EPGQVPYVIGITGRPGPMGPPGSQGPRGEQGYKGRPGPRGPPGYDGEPGVPGRPGEPGPI
GHPTHSGGNQFSPQMMGGADEKSGVSGQLGMVPGSMGPAGARGPPGVTGPPGPPGPQGAP
GEVGDPGSMGPVGARGPEGPSGKPGEDGEPGKPGQPGETGFPGSAGGRGFPGAPGLAGIK
GHRGHPGTIGPKGERGAVGSKGEPGPAGQMGPVGPEGPRGIPGERGRFGPSGATGRRGSQ
GNVGKTGPMGSVGISGPPGFPGPPGTKGGPGATGVRGPAGPQGPRGETGRQGNIGTSGLQ
GPAGTDAGPGAKGPVGSVGVPGPHGPPGPLGSPGPEGSSGPPGIKGQPGDIGIPGFKGEA
GPKGEPGPPGAQGVIGPQGEEGKRGPRGDSGSVGPQGPTGERGAPGNRGFPGADGLPGPK
GAQGDRGITGTSGPKGSVGDPGRTGEPGLPGATGLTGTPGVQGPEGKPGPLGASGEDGRP
GQPGSLGTRGLPGVMGLPGPKGFNGDPGKTGELGSSGAPGQRGPPGKDGEVGPAGPAGPH
GVAGDRGEQGPPGLTGFQGLPGPPGPPGESGKPGDLGIPGEAGAFGQIGPRGERGTPGER
GELGAHGLQGPKGIPGAPGPDGSKGVTTRTGCPESPPGLQGMPGEWASPXSPGWPKGTRG
SLGEKGSEGTPGNDGARGLPGPIGPPGSNGPSGEKGEPGPRGPPGPDGARASPGARGEPG
PSGPVGFAGPPGPDGQPGVKGEPGEPGQKGNAGSPGPQGLSGSPGPGGPPGVAGLKGGRG
TQGPPGATGFPGSAGRVGPPGLTGPVGQPGPLGSPGKEGPAGLRGDTGPPGRQGERGAAG
PSGGPGDKGDSGEDGPTGPDGPPGPSGTTGQRGIVGLPGQRGERGMPGLPGAPGTPGKQG
ASGTSGDKGPPGPVGQPGSKGPVGDPGPDGHAGSDGPPGRDGVLGDRGDRGEIGPAGLPG
ASGAPGSLGPVGPTGEPGRRGDPGSRGPLGPSGLAGKRGLPGPQGPRGDKGEHGDQGERG
QKGHRGFTGLQGLPGPPGTTGEQGSVGIVGPYGQRGSPGPVGPQGKEGYIGQPGPMGPPG
TRGLSGEVGPEGPNGEPGPPGPPGAPGPPTAAVDDLYGHQDYDVGPPPPPEFNEDEAVPN
SNKSDIITADPGVQATLKALGSQIENLRSPDGTKTHPARTCDDLKSCYPLKKSGEYWIDP
NQGCAEDAVKVYCNMETGETCISANPSSIPRKTWWSTRNPTNFKPKWFGADMNGGTLFSY
SSNDQSSNTVTVQMTFLRLLSKEASQNITYHCKNSVGYMDETNGNLKKAVVLKGANDLDL
KAEGNSRFRYNVLEDSCTKANGNWGKTVFEYRTQKTARLPIADIAPVDIGGANQEFGIDI
GPVCFL
NT seq
4521 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactttatgaaatccaggacttttctattttttgctgtttttgtggttcatgtt
tttgttgtgaaatgtcaaggaagtggcgatgaactgggttgttcaaaggatggtcagacc
tacacaaatagagatatatggaaaccacagccatgccaaatctgtgtttgtgacagtgga
actattctctgtgacgagattcaatgtgaggagattctgaactgtgaaaaacctgtaata
ccttttggagaatgttgtccaatatgtcaagatggagagggtggcgatagaggcgatgga
ggcaggggaggcggtggcaatgaaggcagcgctggtagaggatataagggccagaaagga
gaaccaggacaagtcccttatgtaataggtataacaggtcgcccaggcccaatgggccca
ccaggttcacagggaccccgaggtgaacaaggatacaaaggaaggccgggtcctcgaggt
ccccctggctatgatggtgagcctggtgttcctgggaggcctggagaacctggccccatt
ggccaccccacacactctggggggaaccaattttcacctcaaatgatgggaggagctgat
gagaaatcaggagtcagcggccagctcggaatggtgcctggatcaatgggtccagcagga
gcaagggggcctccaggggttacaggcccacctggtcctccaggtccacaaggtgcacca
ggagaagttggggatccaggatcaatgggtccagttggtgctaggggtcctgagggtccg
tctggaaaaccaggtgaagatggagaacctgggaagcctggtcagccaggagaaactggg
tttcctggatctgcgggtggaagaggttttcccggggcacctggtctcgcaggtataaag
gggcacaggggacatcctggaacaattggcccaaaaggggagcgtggagctgttgggtca
aagggtgaacctggcccagctggtcaaatgggtccagtaggtccagagggtccaagagga
attccaggagagagaggacggtttggaccatcaggagccacaggtagacgtggttctcaa
ggaaacgttggtaaaacaggtcccatgggttctgttggtataagtggccccccaggtttc
ccaggtcctccaggaacaaagggtggacctggggctactggagttcgaggacctgcaggg
cctcaaggccctcggggtgaaacaggacgtcaaggcaacattggaacttctggtctacaa
ggtcctgctgggacagatgctggccctggtgctaaaggtccagtggggagcgtgggtgtc
ccaggtccacatggccctcctggtccactaggatcacctggacctgaggggagtagcggg
ccaccgggcatcaaaggccaaccaggagacattggcattccaggattcaaaggagaagca
gggccgaaaggggaaccgggtccacctggggctcaaggtgtaattggtccccaaggtgaa
gaaggaaagagaggaccccgtggagactcaggatctgttggccctcaaggtccaactggt
gaaagaggtgctccaggtaatagaggtttccctggtgctgatggattacctggtccaaag
ggtgcacaaggagatcgtggcataacaggtacctctggtcctaaaggctctgtaggagat
cctggccgcacaggtgaacctgggcttcctggggcaacgggacttactggaactcctggt
gttcagggtcctgaaggaaagcctgggccactgggtgcatctggagaagatgggagacca
ggacaaccaggatcattgggtacaagaggccttccaggtgtcatgggattaccaggccca
aagggttttaatggtgacccaggaaagactggtgagctgggttcttcgggtgcaccagga
caaaggggtccacctggcaaagacggtgaagttggccctgcaggtccagcaggtccacat
ggagtagcaggagacagaggggagcaagggcctcctggtctaacaggttttcagggctta
cctggtccaccaggtccacctggggagtctggaaagccaggtgatctgggtattcctggt
gaggctggtgctttcggtcaaataggcccaaggggagagcgtggcactccaggtgaacga
ggtgaattgggagctcatggtcttcagggtcctaaaggtattcctggagctccaggtcct
gatggttcaaagggggtaaccactagaaccgggtgtccagaatccccaccaggtcttcag
ggaatgccaggagagtgggcatctccgtagagtccaggatggcccaaagggactagaggt
tctcttggtgaaaagggatcagaaggtactcctggtaatgatggtgctagaggtcttcca
ggcccaattgggcctcctggatcaaatggtccctctggtgaaaaaggtgaacctggccct
cgtggtccacctggtcctgatggagcccgagcaagtcctggagctcgtggtgaacctggt
cctagtggccctgttggatttgctggtccacctggtcctgatggtcagcctggtgttaaa
ggtgaaccaggtgagcctggacaaaagggcaatgctggatctccagggccccaaggattg
tctggatcccctggaccaggaggtcctcctggggttgctggactaaagggtggtcgtggt
actcaaggcccaccaggtgcaactggtttccctggatctgctggcagagttggcccacct
ggtttaactggtcctgtaggtcagcctggacctcttggttctcctggaaaggaaggtcct
gcaggtctgagaggtgatactggtccacctggacgccaaggagagcgtggagctgcaggg
ccttctggaggcccaggagacaaaggggactctggagaagatggcccaactggtcccgat
ggccctccaggtccttcaggaacaacaggacaaagagggattgttggtttgccaggtcag
cgaggtgaaagaggaatgcctggtcttccaggggcacctggcactccaggaaaacaaggt
gcatctggtacctcaggtgacaaaggccccccaggtccagttggccaaccaggttccaaa
ggtcctgttggagatccaggtccagatggacatgctggatcagatggccctccaggtcgt
gatggcgtcctaggtgacagaggagatcgtggagagataggtcctgcaggtctgccaggt
gcttcaggggctcctggttctctaggacctgttggccctactggtgagcctggaagaaga
ggtgaccctggttcacgtggtccgctgggtccttctggtctagctgggaaacgaggatta
cctggtcctcaaggccccaggggtgacaaaggagaacacggagatcaaggagaaagaggc
cagaagggtcacagaggctttacaggattacagggcttgcctggtcctcccggtactact
ggtgagcaaggtagtgttggtattgttggaccctatggccagagaggatcaccaggacca
gtgggccctcaaggcaaagaaggatatatcggacagcctggtccaatgggacctcctggc
acacgaggactctctggtgaagttggacctgaaggtcctaatggagaacctggtcctcct
ggtcctcctggtgctcctggtcctccaactgctgctgtggatgatttatatggtcaccaa
gattatgacgttggccccccaccacctccagagttcaatgaagatgaagcagttccaaac
agcaataaatcagatatcataactgctgacccaggtgtccaagctaccctgaaagctctt
ggtagccagatagaaaacctgcgcagccctgatggaactaaaacacacccagccaggacg
tgtgatgatctgaaatcatgctacccattaaaaaaaagcggtgaatactggattgatccc
aaccagggttgtgctgaagatgccgtgaaagtgtattgtaatatggaaactggagagact
tgtatttctgcaaacccatccagtatcccacgtaaaacatggtggagtacaaggaatccc
actaactttaagccaaaatggtttggagcagacatgaatggcggtacacttttcagctat
agcagcaacgaccagtcatcaaacactgtcactgtccaaatgacgtttttgcgtctgctg
tcaaaggaagcctcacagaatatcacataccattgcaaaaacagtgtgggttacatggat
gaaacaaatggcaatctaaagaaagctgttgttcttaaaggtgccaacgaccttgatctt
aaagcagaaggaaacagtcggttcagatacaatgtccttgaggatagctgcactaaagcc
aatggcaactggggtaagacagtcttcgaatacaggacacagaaaacagctcgtcttccc
attgcggatattgctccagtggacattggcggtgcgaatcaagaatttggtatcgacatt
gggccagtttgcttcttgtaa
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