Polyodon spathula (Mississippi paddlefish): 121322794
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Entry
121322794 CDS
T07273
Name
(RefSeq) collagen alpha-2(V) chain-like
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121322794
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121322794
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121322794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
121322794
NCBI-ProteinID:
XP_041119029
LinkDB
All DBs
Position
11:15608327..15658738
Genome browser
AA seq
1510 aa
AA seq
DB search
MVNFVKSRTFLFFAVFVAHAFVVKCQGSGDELGCSQDGQTYTNRDIWKPQPCQICVCDSG
TILCDEIQCEEILNCENPLIPFGECCPVCQDGEGGDGGGGGGGGGGGGGNEGSTGRGYKG
QKGEPGQVPYVTGISGRPGPMGPPGSQGPRGERGYKGRPGPRGTPGYDGEPGVPGQPGEP
GPPGHPTHSGGNQFSPQMMGGTDEKSGVSSQLGMVPGSMGPAGARGPPGVTGQPGPPGPQ
GAPGEVGDPGSMGTVGARGPEGLAGKPGEDGEPGKPGQPGETGFPGSAGGRGFPGAPGLA
GIKGHRGHPGEIGPKGERGAVGSKGEPGPAGQMGPVGPEGPRGIPGERGRFGPSGATGRR
GAQGNIGKTGPMGSVGISGPPGFPGPPGTKGGPGATGVRGPEGPQGQRGETGRQGYIGST
GLQGPAGTDAGPGIKGSMGSVGVSGPHGPPGPLGSPGPEGSSGPPGIKGQPGDIGIPGFK
GEAGPKGELGPPGAQGVIGPQGEEGKRGPRGDSGSVGPQGPTGERGAPGNRGFPGADGLP
GPKGAQGDRGITGTSGPKGSVGDPGRTGEPGLPGATGLTGTPGVQGAEGKPGPLGASGED
GRPGQAGSLGTRGLPGVMGLPGPKGFNGDPGKTGELGSPGAPGQRGPPGKDGEVGPAGPA
GPHGVAGDRGEQGPPGLTGFQGLPGPPGPPGESGKPGDLGIPGEAGAFGQIGPRGERGTP
GERGELGAHGLQGPKGIPGAPGPDGSKGNPGPTGAVGDLGPPGLQGMPGERGISGPNGPK
GERGSLGEKGSEGTPGNDGARGLPGPIGPPGSNGPSGEKGEPGPRGPSGPDGARASPGAR
GEPGPSGPVGFAGPPGPDGQPGVKGEPGEPGQKGNAGSPGPQGLSGSPGPGGPPGVAGLK
GGRGTQGPPGATGFPGSAGRVGPPGLTGPVGQPGPLGSPGKEGPAGLRGDTGPPGRQGER
GAAGPSGGPGDKGDSGEDGPTGPDGPPGPSGTTGQRGIVGLPGQRGERGMPGLPGAPGTP
GKQGTSGTSGDKGPPGPVGQPGSKGPVGDPGPDGHAGSDGPPGLDGALGDRGDRGEIGPA
GLPGASGAPGSLGPVGPTGEPGRRGDPGSRGPLGPSGLAGKRGLPGPQGPRGDKGDHGDQ
GERGQKGHRGFTGLQGLPGPPGNTGEQGSVGIVGPYGQRGSPGPVGPQGKEGYIGQPGPM
GPPGTRGLSGEVGPEGPNGEPGPPGPPGAPGPPTAAVDDLYGHQDYDVGPPPPPEFNEDE
AIPNSNKSDIVTADPGVQATLKALGSQIENLRSPDGTKKHPARTCDDLKSCYPLKKSGEY
WIDPNQGCAEDAVKVFCNMETGETCISANPSSIPRKTWGGTRNPTNFKPKWFGADLNGGT
LFSYSSNDQSSNTVTVQMTFLRLLSKEASQNITYHCKNSVGYMDEKNGNLKKAVVLKGAN
DLDLKAEGNSRFRYNVLEDSCTKANGNWGKTVFEYRTQKTARLPIADIAPVDIGGANQEF
GIDIGPVCFL
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactttgtgaaatccaggacttttctattttttgctgtttttgtggctcatgct
tttgttgtgaaatgtcaaggaagtggggatgaactgggttgttcacaggatggtcagacc
tacacaaatagagatatatggaaaccacagccgtgccaaatctgtgtttgtgacagtgga
actattctctgtgatgagattcaatgtgaggagattctgaactgtgaaaatcctctaata
ccttttggagaatgttgtccagtatgccaggatggcgagggtggtgatggaggtggtgga
ggcggtggaggtggcggaggcggtggcaatgaaggcagcactggtagaggatataagggc
cagaaaggagaaccgggacaagtcccttatgtaacaggtataagcggtcgtccaggccca
atgggcccaccgggttcacaaggaccccgaggtgaacgaggatacaaaggaaggccgggt
cctcgaggtacccctggctatgatggcgagcctggcgttcctgggcagccaggagaacct
ggcccccctggccaccccacacattctggggggaaccaattttcacctcaaatgatggga
ggaactgatgagaaatcaggagtcagcagccagctcggaatggtacctggatcaatgggt
ccagcaggagcaaggggacctccaggggttacaggccaacctggtcctccaggtccacag
ggtgcaccaggagaagttggggatccaggatcaatgggtacagttggtgctaggggtcct
gagggtctggctggaaaaccaggtgaagatggtgaacctgggaagcctggtcagccagga
gaaactgggtttccgggatctgcgggtggaagaggttttcccggggcacctggtcttgca
ggtataaaggggcacaggggacatcctggggaaattggcccaaaaggggagcgtggagct
gttgggtcaaagggtgaacctggcccagctggtcaaatgggcccagtaggtccggagggt
ccaagaggaattccaggagagagaggacggtttggaccatcaggagccacaggtagacgt
ggtgctcaaggaaacattggtaaaacaggtcccatgggttctgtcggtattagtggcccc
ccaggtttcccaggtcctccaggaacaaagggtggacctggggctactggagttcgagga
cctgaagggcctcaaggccagcggggtgaaacaggacgtcaaggctacattggatctacc
ggtctacaaggtcctgctgggacagatgctggccctggtattaaaggttccatggggagc
gtgggtgtctcaggtccacatggccctcctggtcccctaggatcacctggacctgagggg
agtagcgggccaccgggcatcaaaggtcaaccaggagacattggcataccaggattcaaa
ggagaagcagggcctaaaggggaactgggtccacctggggctcaaggtgtaattggtccc
caaggtgaagaaggaaagagaggaccccgtggagactcaggatctgttggccctcaaggt
ccaactggtgaaagaggtgctccaggtaatagaggtttccctggtgccgatggattacct
ggtccgaagggtgcacaaggagatcgtggcataacaggtacctctggtcctaaaggctct
gtcggagatcctggccgcacaggtgaacctgggcttcctggggcaacgggacttactgga
actcctggcgttcagggggctgaaggaaagcctgggccactgggtgcatctggagaagat
gggagaccaggacaagcaggatcattgggcacaagaggcctcccaggtgtcatgggatta
ccaggcccaaagggttttaatggtgatccaggaaagactggtgagctgggttctccgggt
gcaccgggacaaaggggtccacctggcaaagacggtgaagttggccctgcaggtccagca
ggtccacatggagtagcaggagacagaggggagcaaggacctcccggtctaacaggtttt
cagggtttacctggtccaccaggtccacctggggagtctggaaagccaggcgatctgggt
attcctggtgaggccggtgctttcggtcaaataggcccaaggggagagcgtggcactcca
ggtgaacgaggtgaattgggagctcatggtcttcagggtcctaaaggtattccaggagct
ccaggtcctgatggttcaaagggtaacccagggcctactggagctgttggtgatcttggc
ccaccaggtctgcagggaatgccaggagagaggggtatctccggtcctaatggcccaaag
ggtgaaagaggttctctaggtgaaaagggatcagaaggtactcctggtaacgatggtgct
agaggtcttccaggtccaattgggccacctggatcaaatggtccctctggtgagaaaggt
gaacctggccctcgtggtccatctggtcctgatggagcccgagcaagtcctggagctcgt
ggtgaacctggtcctagtggccctgttggatttgctggtccacctggtcctgatggtcag
cctggtgttaaaggtgaaccaggtgagcctggacaaaagggcaatgctggatctccaggg
ccccaaggattgtctgggtcccctggaccaggaggtcctcctggggtggctggactaaag
ggtggtcgaggtactcaaggcccaccgggtgcaactggtttccctggatctgctggcaga
gttggcccacctggtttaactggtcctgtaggtcagcctggacctctcggttctcctgga
aaggaaggtcctgcaggtctgagaggtgatactggtccacctggacgccaaggagagcgt
ggggctgcaggaccttctggaggcccaggagacaaaggggactctggtgaagatggccca
actggtcctgatggccctccaggtccttcaggaacaacaggacaaagagggattgttggt
ttgccaggtcagcgaggtgaaagaggaatgcctggtcttccaggggcacctggtactcca
ggaaaacaaggtacatctggtacctcaggtgacaaaggccccccgggtccagttggccaa
ccaggttccaaaggtcctgttggagatccaggaccagatggtcatgctggatcagatggc
cctccaggtcttgatggcgccctaggtgacaggggagatcgtggagagataggtcctgca
ggtctgccaggtgcttcaggggctcctggttctctaggacccgttggccctactggtgag
cccggaagaagaggtgaccctggttcacgtgggccactgggtccttctggtctagctggg
aaacgaggattacctggtcctcaaggccccagaggtgacaaaggagaccatggagatcaa
ggagaaagaggacagaagggtcacagaggctttacaggattacaaggcttgcctggtcct
cccggtaacactggtgagcaaggaagcgttggtattgttggaccctatggtcagagagga
tcaccaggaccagtgggccctcaaggcaaagaaggatatatcggacagcctggtccaatg
ggacctcctggcacacgaggactctctggtgaagtcggacctgaaggtcctaatggagaa
cctggcccccctggtcctcctggtgctcctggtcctccaactgctgctgtggatgattta
tatggtcaccaagattatgacgttggccccccaccacctccagagttcaatgaagatgaa
gccattccaaacagcaataaatcagatattgtaactgctgacccaggtgtccaagctacc
ctgaaagctctcggtagccagatagaaaacctgcgcagccctgatggaaccaaaaaacac
ccagccaggacgtgtgatgatctgaaatcatgctacccattaaaaaaaagcggtgaatac
tggattgatcccaaccagggttgtgctgaagatgcagtgaaagtgttttgtaatatggaa
actggagagacttgtatttctgcaaacccatccagcatcccacgtaaaacatgggggggt
acaaggaatcccactaactttaagccaaaatggtttggagcagacctgaatggcggaaca
cttttcagctacagcagcaatgaccagtcatcaaacactgtcactgtccaaatgacgttt
ttgcgtctgctgtcaaaggaagcctcacagaatattacataccattgcaaaaacagtgtg
ggttacatggatgaaaaaaatggcaatctgaagaaagctgttgtccttaaaggtgccaac
gaccttgatcttaaagcagaaggaaacagtcggttcagatacaatgtccttgaggatagc
tgcaccaaagccaatggcaactggggaaagacagtcttcgaatacagaacacagaaaaca
gctcgtcttcccattgcagatattgctccagtggacattggtggtgcgaatcaagaattt
ggtatcgacattgggccagtttgtttcttgtaa
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