Polyodon spathula (Mississippi paddlefish): 121328089
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Entry
121328089 CDS
T07273
Name
(RefSeq) collagen alpha-2(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
pspa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121328089
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121328089
09142 Cell motility
04820 Cytoskeleton in muscle cells
121328089
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pspa04147
]
121328089
00536 Glycosaminoglycan binding proteins [BR:
pspa00536
]
121328089
Exosome [BR:
pspa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121328089
Glycosaminoglycan binding proteins [BR:
pspa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121328089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121328089
NCBI-ProteinID:
XP_041128506
LinkDB
All DBs
Position
15:complement(11558741..11633921)
Genome browser
AA seq
1693 aa
AA seq
DB search
MQVLQMIRPRIITLRCLLLSLTLPLLLTGQVQAGGKSYTGPCGGRDCSSGCKCFPEKGAR
GMPGLLGPQGPSGPHGFPGPPGLAGQKGEKGGKGRPGIHGPKGAMGVTGVPGFPGADGIP
GHPGQPGPRGKPGADGCNGTAGDPGQFGLPGFMGVPGLPGIPGSKGQKGEPLPVTVIMNR
LRGDPGDQGFPGIPGSQGFPGTAGPRGNLGPQGLKGQRGPPGPKGSQGVSPKGIKGEPGE
VGLPGQPGTPSLSYGKELYGPPGEKGERGPKGEAGTSSFSSEKGEDGVMGFPGQRGLSGL
DGQPGTPGVQGIPGILGVPGRDGDTGMKGSRGDTGPPGPTKYIEMKPLQLKGFQGEPGTE
GEKGQQGMRGEPGLPGYSGLPGQQAFTPGRHGPAGPIGPKGAKGIRGEPGLPAAQPGPKG
EEGRPGLPGPPGLKGTSFPGGPPVRPADRGVPGPPGVKGFKGEAGECLCETSGAPAGPPG
PAGVIGPKGRHGEQGQRGDSGDPGQTGPRGLPGFPGNDGPIGNQGQKGEPSTATEKGAKG
EPGDSGLPGPPGQRGRQGRDGRYGIPGLKGLPGDGVKGHQGDKGFMGPPGVRGLRGEVGQ
PGLGFQSQKGIPGLQGDPGIDGVPGPAGLPGLPGDCVCCGAKDGAGRENNDTATAGEPCD
LTAPGPPGPSGPPGQSGFPGWKGIAGLPGLPGQRGFDGLKGHSGDPGVGGLPGPPGFIGP
RGDSGLPGRPGQRGSAGRSGYPGMPGEPGEKGAHGEVLGGALGAPGEKGPQGQIGQKGLS
GDPGLPGFKGMEGMPGIRGYKGEQGTFGLQGESGQPGPAGLKGFPGQQGYPGPPGAFGYS
GPPGLIGERGEAGDEGPPGPAGMKGVPGSPGSPGSPGQQGHIGNPGASGVDGFPGLPGQK
GVKGSKGMPGFNGMQGQKGVMGLEGQKGEPGFPGEIGKKGEVGKPGEKGDRGKAGPPGEK
PHILLSTIIEMKGEKGDVGNPGSEGFTGPRGLKGMPGVPGQHGQHGLPGNPSDVKGVKGT
TGTQGFPGYRGTPGSPGPEGISGFPGMPGDRGEKGVTGDHGFPGDPGLKGSKGDIGPRID
LPGVTGHTGEVGDPGLAGGPGFTGQPGDHGNPGFSGIDGMKGEKGLPGYEGQTGSVGMTG
SPGNQGAKGASGIPGQPGTTGNYGLSGDRGFPGIKGIRGLDGLAGQKGLPGSTGADGRGS
QGIPGASGEKGEPGIPSVEPGVPGVPGLRGTRGDPGNEGPMGSSGLQGPPGLPGASVRAG
LKGDMGTRGPQGRQGYPGAQGVPGRPALHGAEGEPGDPGPFGLDGPTGMKGEPGYSGAVG
INGVSGIKGQKGEQGMMGFPGRDGLLGDRGPVGPKGDTGLTGLAGPPGSPGPAPLPPRVT
GERGAPGPHGIQGPAGIQGESGPQGPPGDSGLMGPSGKPGFPGVGGRPGNPGYRGEVGSI
GPQGLQGLEGSSGRAGSPGLPGMPGRSVSLGYLLVKHSQSDQTPMCPVGMSKLWDGYSLL
YFEGQEKSHNQDLGMAGSCLPKFNTMPFLYCNPGDVCYYASRNDKSYWLSTTAPLPMMPV
EEDEIKSYISRCSVCEAPSLAIAVHSQDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQ
SLVSPGSCLEDFRATPFIECNGAKGTCHYFANKHSFWLTSIDSSFQSAIVSETLKAGQLL
SRISRCQVCMKNL
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtattacaaatgatacgaccacgaataataactttaaggtgtttgctgttgtcg
ctaacactgccgcttcttttgactggtcaagtccaagctggtgggaagtcctacacgggg
ccatgtggaggcagagactgcagcagcggatgcaaatgttttccagaaaagggtgctcgg
ggtatgccaggtttacttggccctcagggacctagtggacctcacggattcccaggacca
ccgggattagctggacaaaaaggagaaaagggtggcaaaggaagaccggggatccacggg
cccaaaggagctatgggagtaacgggagtgcctgggtttccgggagcagacggcattcct
ggtcatccaggtcagccaggaccaagagggaaacctggcgctgatggctgcaacgggaca
gctggagaccccggacaatttggactgccaggatttatgggtgttcccggtttgccgggt
atcccaggttcaaaaggacagaaaggagagcctttgccagtgacagtaatcatgaatcga
ttacggggggatcctggtgaccaaggttttcctggaattccaggctcgcaggggtttcca
ggcaccgcaggacctcgaggcaacctggggccacagggactgaagggacaacgtggacca
ccaggaccaaagggttcccagggagtatcgcctaagggaataaaaggagaaccaggtgag
gttgggttgccagggcaaccaggtacgcctagtctgtcatatgggaaggaattatatgga
cccccgggagaaaagggagaaagaggtccaaaaggagaggcaggcacgtcgagtttttca
tctgaaaaaggagaggacggagtgatgggattccctgggcagaggggcttgtcgggtttg
gatggacaaccaggaaccccaggggtacagggaattccaggcatccttggtgtcccagga
agagacggagacacagggatgaagggttcgaggggtgacacaggccccccaggaccaaca
aaatacattgaaatgaaacctttacagttgaaaggtttccaaggtgaaccaggaactgaa
ggggaaaagggtcagcaaggcatgagaggtgaaccaggtctgccggggtattcagggtta
cctggacaacaagctttcacaccagggagacatggtccagcaggcccaataggcccaaaa
ggggccaaaggcatcaggggtgaaccaggacttcctgcagcccagcccggaccgaagggt
gaagaaggacgccctggcttacctggcccaccaggactcaaaggaacaagttttcctgga
gggccacctgtaagaccagctgatcggggagtgccgggtcccccaggggtaaagggattc
aaaggagaagcaggggaatgtttatgtgaaacttcaggagccccagcaggcccccctggt
cctgctggcgttataggaccaaaaggaagacacggggaacaaggacaacgtggagactcg
ggcgatccaggtcaaaccgggccaaggggactgccgggatttccaggaaatgatggacct
ataggtaatcaaggacagaaaggtgaaccttctacagcaactgaaaaaggagctaaagga
gagccgggtgattctggtttgcctggcccacctggtcagagaggccgccaaggcagagat
ggtcgctatggcattccaggtttaaaaggcctccctggtgacggggtaaaaggccatcaa
ggagacaaaggatttatgggcccaccaggtgtaagaggactgaggggtgaagtgggtcag
cccgggcttggctttcagtctcagaaaggtattcccgggctgcaaggtgatcctggcata
gatggtgttcccgggcctgcaggtttaccagggcttccaggtgactgtgtctgttgcggt
gctaaggacggtgctgggagagagaacaatgacacagccacagcaggagaaccctgtgac
ctcacagcacctggtcccccaggcccttcaggaccaccaggacaatcaggcttcccaggt
tggaaaggtatagcagggttaccaggtctgcctggccagagaggattcgacggactcaaa
ggccattctggtgacccaggtgtaggaggcttgccaggaccaccaggctttatcggacct
cgtggagattcaggcctgccgggccgtcctggacagaggggttccgcagggaggtcgggt
tacccaggcatgccgggagagccaggggagaagggggcccatggggaggtcctgggaggc
gcactcggagccccaggggaaaaaggtcctcaaggacagatcggacagaagggcctgtcg
ggagatccagggctgccaggattcaaaggaatggagggcatgcctggtatccgaggctat
aaaggtgagcagggtacttttggcctgcagggagagtcaggccaaccagggccggcaggg
ctaaaaggattccccggacagcaaggatatccaggccctccaggagcattcggctactct
gggccaccaggcctgattggtgagagaggggaagcaggagatgaaggcccgccaggtcct
gccggaatgaaaggtgtccctggatccccagggagtcccgggtcaccagggcaacaaggc
catattggcaaccctggtgcttcaggtgtggatggatttccaggccttcctgggcaaaaa
ggggtcaagggatcaaagggaatgccaggcttcaacggaatgcagggccagaaaggagta
atggggttggaagggcaaaagggggagcctggatttcctggggagattggaaaaaaaggt
gaagttggaaagccaggtgaaaagggtgatcgcggtaaagctggaccccctggtgaaaag
ccacacatcctactgagcacaataattgaaatgaagggtgaaaagggtgatgttggtaat
ccagggagtgaaggatttactggaccaagaggccttaaagggatgccgggggtaccaggc
cagcacggtcagcacggcttgcctgggaaccccagtgatgtgaagggtgttaaaggcacc
acaggcactcaagggtttcctgggtacagaggaacccctggctcccccgggcctgaagga
atcagtggctttccaggaatgccaggagacaggggtgaaaaaggtgtaacaggggaccac
ggttttccaggtgaccctgggctgaagggaagcaaaggtgacattggcccaaggattgac
ttacctggcgttacgggtcacacaggagaagtaggtgatccagggctggcaggagggcca
ggttttacagggcagccaggagaccatggaaatccaggcttttcaggaattgatggcatg
aaaggtgaaaagggtcttcctggatatgaaggacaaacaggctccgtaggtatgacaggt
tctccaggaaatcaaggcgccaagggtgcgtccggtataccaggccagccaggaaccaca
gggaattacggactgtcaggcgatcgaggtttcccaggtattaaaggtataagaggtctt
gatggtctggctggacagaaaggattaccggggtcaacaggtgctgatggtcggggttct
caaggcatacctggtgcctcaggggagaagggggagcccggaattcccagtgtcgagccg
ggggtgcctggagttccaggtctaagggggacaagaggcgacccaggtaatgaaggaccg
atgggatcctcaggacttcaaggcccacctggactgccaggtgcctccgtcagagcaggg
ttgaagggggacatgggcactcgaggaccacaggggcgtcaaggttaccccggggctcaa
ggtgttccaggcaggccagctctgcacggtgcagaaggagaaccaggggacccaggacct
tttggattggacgggcccacgggcatgaagggagagccagggtattcaggagcagttgga
atcaatggggtctctgggataaaaggtcagaaaggtgaacaaggcatgatgggattccct
ggcagagatgggttacttggagacagggggccagttggaccaaagggcgatacaggactc
actggtttggcaggtcccccagggtctccggggccagcccccttacccccgcgggttaca
ggagagcggggggctcctggaccgcatggaatacaggggcctgctggcattcagggggag
tcagggccacagggccccccaggagattcaggtctcatgggccccagtgggaaaccaggt
tttccaggagtgggcggcaggccaggtaacccaggttaccgtggtgaagttggatccatt
ggcccacaaggccttcaaggactggaagggtcatcaggtcgggcaggtagccctggtttg
ccaggcatgccaggccgcagtgttagcctcgggtaccttctagtgaagcacagccaatcg
gaccagacaccaatgtgcccagtgggaatgagcaaactctgggacggatacagcttgctt
tatttcgaaggccaagaaaaatctcacaatcaggacctaggaatggcgggatcatgtcta
ccgaagtttaacacaatgccgttcctgtactgcaaccctggggacgtctgttactacgcc
agcagaaatgacaaatcctactggctgtcaaccactgctcccctgcccatgatgccagtg
gaagaggatgaaataaagtcgtacatcagccgctgctcggtctgtgaggccccgtccctt
gctattgctgtgcacagccaagatatcacaataccacagtgccctgcaggctggcgcagt
ttatggattggttattccttcctaatgcatacggcagcaggagacgaagggggcggccag
tccctggtgtcacctgggagctgcctggaagatttccgggccactcccttcattgagtgc
aacggagcgaaggggacctgccattactttgcaaacaagcacagcttttggttaacctca
atagacagttcattccaaagtgcgattgtgtcagaaacactgaaagcagggcagctcctg
tctcgaatcagccggtgccaggtttgcatgaagaacctataa
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