Polyodon spathula (Mississippi paddlefish): 121328740
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Entry
121328740 CDS
T07273
Name
(RefSeq) WD repeat-containing protein 82
KO
K14962
COMPASS component SWD2
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121328740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pspa03019
]
121328740
03036 Chromosome and associated proteins [BR:
pspa03036
]
121328740
Messenger RNA biogenesis [BR:
pspa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
121328740
Chromosome and associated proteins [BR:
pspa03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
121328740
COMPASS/SET1 complex (yeast)
121328740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
NBCH_WD40
MinC_C
Motif
Other DBs
NCBI-GeneID:
121328740
NCBI-ProteinID:
XP_041129686
LinkDB
All DBs
Position
16:38333785..38340783
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AA seq
313 aa
AA seq
DB search
MKLTDNVLRSFRVAKVFRENSEKINCFDFSSNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKVDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD
TFITGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEIVTLYDLRSFD
KGPFATFKMLHDRTCEWTGLKFSNDGKLILVSTNGGTLRLLDAFKGVVLHSFVGYNNSKG
VTLEASFTPDSQFIMIGSEDGKVHVWSAESGMKVAVLDGKHTGPVTCLQFNPKFMTFASG
CSNMAFWLPTIDD
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgacggataacgtgctgcggagtttccgcgtagccaaggtcttcagggagaac
tcggagaaaatcaactgttttgatttcagctcgaacggggagacggtgatttccagcagc
gacgatgactcgatcgtcctgtacgactgccaggaggggaagccaaagcgtactctgtac
agtaagaagtacggcgtggacctgatcagatacacgcatgcagccaacactgtggtctac
agctcaaacaaagtggacgacaccattcggtatctgtcacttcatgataacaagtatatt
cgctacttcccgggacacagtaagagagtggtggccttgtccatgtctcctgtggatgac
accttcataaccgggtccctggataaaaccatccgcctctgggacctgcgctccccaaac
tgtcagggcttgatgcacctgcaggggaaacctgtctgttcctttgaccctgagggactc
atcttcgcagctggtgtgaactctgagattgtgacgctgtatgacctgcggtcattcgac
aagggtccctttgctaccttcaagatgctgcacgacaggacgtgcgagtggaccgggctc
aagttcagtaacgacgggaagctgatcctggtctccaccaacgggggcaccctgcgactc
ctcgatgcattcaagggggttgtgctgcactccttcgtgggctacaataacagtaaaggt
gtgacgttggaggcttcattcactccggactcccagtttatcatgatcggctccgaggac
gggaaggtccacgtgtggagtgcggagagcggaatgaaggtggccgtgctggatgggaag
cacaccggccctgtcacctgtctgcagttcaaccccaaattcatgaccttcgccagcggc
tgctcaaacatggctttttggttgcccacaatagatgactga
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