Polyodon spathula (Mississippi paddlefish): 121330542
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Entry
121330542 CDS
T07273
Name
(RefSeq) laminin subunit gamma-1-like
KO
K05635
laminin, gamma 1
Organism
pspa
Polyodon spathula (Mississippi paddlefish)
Pathway
pspa04510
Focal adhesion
pspa04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
pspa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121330542
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121330542
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Gene cluster
GFIT
Motif
Pfam:
Laminin_N
Laminin_EGF
Laminin_B
MscS_porin
DUF6061
Motif
Other DBs
NCBI-GeneID:
121330542
NCBI-ProteinID:
XP_041133064
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Position
18:24778205..24833305
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AA seq
1594 aa
AA seq
DB search
MHWVARILTALTCLAACCYGAMDECVDDSNRPQRCMPEFVNAAFNVTVVATNTCGQPQEE
YCVQTGVTGVTKSCHICDARDPRVHHSAVYLTDYNNQADTTWWQSQTMIAGIQYPNSINL
TLHLGKAFDITYVRLKFHTSRPESFAIYKRTSEDGPWVPYQYYSGSCEKTYQKLNRGFIR
TGEDEQQALCTDEFSDISPLTGGNVAFSTLEGRPSAYNFDSSPVLQDWVTATDIRVTLNR
LNTFGDEVFNDPKVLKSYYYAISDFAVGGRCKCNGHASECLKNEYEKMACNCKHNTFGMD
CEKCLPFFNDRPWRRATAENPNECLPCNCNGKSRECYYDSELYRATGHGGHCLNCDDNTD
GPNCERCRDNYYRLGADGHCLPCICNSVGSLSTQCDNYGRCSCKPGVIGEKCDRCQPGYH
SLTEAGCRPCQCTPAGSTQECDVQTGRCQCKENVEGFNCDRCKLGYFHLDPVNPRGCTAC
FCFTHSAVCDSGDGYSINTITATFDRDAEGWRGEQRDGTEALVQWSPNSREISLISEDYF
PIYFVAPEKFLGNQMLSYGQNISFSFRVDRRDTRLSAEDVVLEGAGLRVAVPLIAQGNAY
PSENKQTYVFRLHDATDYPWRPSLGHADFQKLLHNLTAVKIRGTYSEKSAGYLDDVTLTT
ARRGPGTPARWVEKCTCPTGYLGQFCEQCAPGYKRANPSLRSFSSCEPCTCHGHSDTCDP
ESGNCYCRDHTDGLNCERCEDGYYGDSTIGNPTDCKPCPCPGGSSCAVVPKTREVVCTNC
PTGTTGKRCELCDDGYFGDPLGANGPVRACKVCQCNNNIDPNAVGNCDRQTGECLKCTYN
TAGFYCDRCNDGFFGNALNTDTADKCKPCGCSPYGTVDRQTTCSQVTGQCECLPHVTNRD
CSACQPGFYNLLSGQGCERCDCNAIGSTNGQCDIHSGQCECQPGITGQQCERCEVNHFGF
GPEGCKPCDCDPEGSRTLQCKQDGRCECREGFVGNRCDMCEENYFYNRSRPGCQECPACY
SLVKEKVNQQRQKLRELENLIENLGSSQETVSDKAFEDRLKDAEKAIMDLLQDAQNSKDV
DKGLLDRLREINNTLTTQYGRLQNINSTVESTGALADRSRDRVREAENLIGNARRKLEKA
KDAISKVDIKPPTSTGDPSNMTLLAEEARKLADKHKKEADEIEETAKSANDTSTEAYNLL
LKTLAGEGQTSKDIDDLNKKYNEAKSIAKDLEKQANKVHAEAEEAGNKALQIYANLTSLP
PVDTKALENEANKIKKEAAELDSLIDRKAKDYEDLRDDLRGKEMEVQKLLDKGKTEQQTA
DQLLARADAAKALAEEAAKKGRATYQEAQDILANLNDFDRRVNDNKTAAEDAMKKIPGIN
ATIIAANEKTKQAEAALGNAGADAKEAKKKAEEAEKIASAVQKNAAKTKSDAEQTFDDTM
KLDDEVSNMMDQLKAAEDDLAKKAAEADQDMMMAGMASQAAQEAEDNARKAKNAVKNVLA
TINDLLRLLGDIDNVDLNKLKEIEELLAKAKKQMKDNDLDRKLAELNGAAKQQEDMIKDY
DRQIGEIRADIDNLEDIKNTLPSGCFNTPSIETP
NT seq
4785 nt
NT seq
+upstream
nt +downstream
nt
atgcattgggtagctcgcattttaactgcattgacttgtttggctgcgtgctgctatggt
gctatggatgaatgtgtggacgactcaaacagaccccaacgctgtatgccggagtttgtg
aacgccgctttcaatgtgactgtcgtggccaccaacacttgcggacaaccgcaagaagag
tactgcgtacaaaccggggtaacgggagtcaccaagtcctgccatatatgcgatgccagg
gacccgagggtacaccacagcgcagtttacctcactgattacaacaaccaagcagacacc
acctggtggcaaagccagaccatgatagctggcatccagtaccccaattccatcaaccta
accctacaccttggcaaagcttttgacatcacatatgtgcggctcaagttccacaccagt
cgaccagagagttttgccatctacaagcgcacaagtgaggatggcccctgggtaccctac
cagtactacagtggctcctgtgagaaaacttaccagaagctaaaccgaggcttcatccgg
actggtgaggacgagcagcaggcgctctgcactgacgagttcagcgacatctctcctctc
accggggggaatgtggccttctccacactcgagggacggcccagtgcctacaactttgac
agcagccctgttctacaggattgggtaacagccactgatattcgggtgaccttaaacaga
ctaaacacctttggagatgaagttttcaacgaccccaaagtcctaaaatcatattactat
gcaatctccgactttgcagtgggcggaaggtgcaagtgtaatggtcacgccagtgagtgt
ttgaagaatgagtatgagaagatggcgtgcaactgcaagcacaacacgtttggcatggac
tgcgaaaagtgtctgcctttcttcaacgaccggccgtggaggcgagccaccgctgagaac
cccaacgagtgcctgccatgcaactgtaacggcaagtctcgggagtgttactatgactct
gagctgtaccgcgctacaggacatggtggacactgcttaaactgtgatgacaacactgat
ggccccaactgcgagcgctgccgagataactactaccgactgggggccgacggccactgt
ctgccctgtatctgcaattcagtgggatccctgagcactcagtgtgataattatgggcgc
tgcagctgcaaaccaggtgtgattggtgagaagtgtgatcgctgtcagcctggataccac
tcgctcacagaggccgggtgcaggccatgccagtgcacccctgcaggaagcacacaggag
tgtgatgttcagactggccgatgccagtgcaaagaaaatgttgagggtttcaactgtgac
aggtgcaaacttggatatttccacctggacccagtgaacccccgaggttgcacggcctgc
ttctgtttcacacactctgcagtctgcgacagcggggatggctacagcattaacacaatc
acagccacctttgatagagatgctgaaggctggcggggagagcagcgtgatggcacagag
gccctagtacaatggtcccccaacagccgtgagatctccttgatatcagaagattacttc
cctatctactttgttgctccagagaaattcctgggaaaccagatgctgagctatgggcag
aacatttctttcagtttccgtgtggaccgccgtgacacgcgcctgtctgctgaggacgtg
gtgctggagggggcggggttgcgggttgctgtgcccctcatcgcccagggaaatgcctac
cccagtgaaaacaagcagacctatgtcttcaggctgcacgatgccactgactatccttgg
aggcccagccttggtcatgctgatttccagaagctgcttcacaacctgactgcagtcaag
atccgcggcacttacagtgagaaaagtgctggttacttggatgatgtcacattgacaact
gcccgtcgtggtcccggaacccctgcccgctgggtggagaagtgtacctgccctactggt
tacttaggccagttctgtgagcagtgcgcccctggctacaagagggccaaccccagcctt
agatcattcagctcctgtgagccctgtacctgccatggacacagcgacacatgtgaccca
gaatctggcaattgctactgtagagatcacactgatggcctcaactgcgagcgatgcgag
gatggttactatggagactcaaccattgggaaccctactgattgcaagccctgcccctgc
ccgggcggatccagctgtgccgtcgtcccaaaaacaagagaggttgtgtgtaccaactgc
cccactggcaccacaggcaagcgatgtgagctgtgtgacgatggctacttcggagacccc
ttgggtgcgaatggccctgtccgagcctgtaaagtgtgccagtgcaacaacaacatcgac
cccaacgctgtgggcaactgtgaccggcagactggggaatgcctgaaatgcacctacaac
actgctggcttctactgtgaccgctgcaatgacggcttcttcggcaacgcgctgaacacc
gacactgccgataagtgcaaaccgtgtggctgctctccatacggcactgtggacagacag
accacctgctcccaggtcactggccagtgcgaatgtctgcctcacgtcaccaacagagac
tgtagtgcctgccaacccggcttctacaacctgctcagcggacagggctgtgaacggtgt
gattgtaatgccattggctccacgaacggtcagtgtgatatccacagtggtcagtgtgag
tgccagcccgggatcactggtcagcaatgtgagagatgtgaggtcaaccactttggcttc
ggaccggaaggatgcaaaccctgtgactgtgacccagagggctctcggaccctgcagtgc
aaacaggatggccgctgtgagtgcagggaaggctttgtgggaaaccgctgtgacatgtgt
gaggagaactacttctacaaccgctcacggcctggctgccaggagtgtcctgcctgctac
tcgctggtgaaggagaaggtgaaccaacagaggcagaagctgcgtgagctggagaacctg
attgaaaaccttggctccagccaggagacggtgagcgacaaggcatttgaggaccggctc
aaagatgctgaaaaagccatcatggaccttcttcaggatgctcagaacagcaaggatgta
gataaaggccttcttgaccgtctgcgtgaaatcaacaacaccctgaccactcagtatggc
cgtctgcagaacattaacagcacagtggagagcacaggagctttggcagacaggtcccga
gaccgtgtgcgggaagcagagaacctgattggtaacgcccgccgtaagctggagaaggcc
aaggacgccatctcgaaagtggacattaaacctccgacctcgactggggatcctagcaat
atgaccctcttggctgaggaggctcgcaagctagcagacaagcataagaaggaagcagat
gaaattgaggagacagctaagagtgccaatgacacctccactgaagcctacaatctgcta
ctgaagactctggctggtgagggacagaccagcaaggacattgatgatctcaataaaaag
tacaatgaagcgaagagcattgccaaagacctagagaagcaggccaacaaggtccatgct
gaggcagaggaagctggaaacaaagcattgcagatctatgccaacctgaccagcctgcca
ccagtagacaccaaggcgcttgaaaacgaggcaaacaagatcaagaaggaagctgcggaa
ctagactccctgattgacaggaaggctaaggactatgaagacctgagagacgacctccga
gggaaggaaatggaggttcaaaagcttctggacaaagggaaaaccgagcagcagactgca
gaccagctgcttgctcgagcagatgcagccaaggccctggctgaggaggccgctaagaaa
gggagagccacttaccaggaggcacaggacattctcgccaacctgaatgattttgacaga
cgggtgaatgacaataagactgcagcggaggatgcaatgaagaagatccctgggatcaac
gcgaccatcatcgcagccaatgagaagaccaagcaggccgaggcggcccttggcaatgct
ggggcagacgccaaggaggcaaaaaaaaaagcagaagaggctgagaagattgccagtgct
gtgcagaagaatgctgcaaagacaaagtcggatgcagagcaaacctttgatgatacgatg
aagctggacgatgaagtgagcaacatgatggaccagctgaaggcagctgaggatgatctg
gccaagaaggcggcagaggctgaccaggacatgatgatggcaggcatggcctcccaggct
gcccaagaagctgaagataatgccagaaaagcaaagaatgcagtgaagaatgtcttggcc
accattaatgatttactcagactactaggggacattgacaatgtggacctcaacaagctg
aaggagattgaggaattgctggctaaggccaagaagcaaatgaaggacaatgatctggac
cggaagctggcagagctgaacggcgctgcaaagcagcaggaggacatgatcaaggactac
gaccggcagattggggagatcagagcggacattgacaacctggaagatatcaagaacaca
ctaccttccggctgcttcaacaccccctccatagagacaccctaa
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integrated database retrieval system
