KEGG   Paraburkholderia sprentiae: BJG93_05705Help
Entry
BJG93_05705       CDS       T04610                                 

Definition
(GenBank) DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
pspw  Paraburkholderia sprentiae
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:pspw00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    BJG93_05705
Enzymes [BR:pspw01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BJG93_05705
DNA repair and recombination proteins [BR:pspw03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BJG93_05705
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
1:complement(1292114..1294942)
Genome map
AA seq 942 aa AA seqDB search
MNDRLDLYHRKRRFEDTPEPAGAAARKRAASKTGKRAPRAAPDTLSYVIQEHHARRLHYD
FRLELNGALLSWAIPKGPSLDPSVKRLAVHVEDHPIEYGTFEGEIPPGNYGAGTVIVWDR
GTWEPAGSAAEAARSYAAGKLKFHLHGEKLHGGWTLVRSHMRGSGDKEQWLLIKERDEQA
RDESDYDVLKELPGSALTDGASKGRRTKQSKADTATPRDGTSASAGKPARSASSRRTTDP
KRPDIVATRSAQSLRELAVSPSIEGALKAALPASLKPELATLVDTAPPGDDWLYEIKFDG
YRVLARIDHASKAKGGAVSVFTRNGNDWTARFSKQIEAFAALELQSAWLDGEAVVLDERD
VPNFQLLQNAFDAHRPQDIVIYLFDLPFLNGYDLRGVPLEQRRAILRALLEGVDDRVLRF
SNDFAFSADELLESACDMALEGIIGKRRDSSYVSGRSPSWIKLKCRRRQEFVIGGYSEPS
GSRAAFGALLLGVYDGDGRLRYAGRVGTGFDAALLRSVKRALDAHPSKRMPFASEPRERS
RTPVHWVDPVLVAECNFAEWTSDGIVRQASFVSLRDDKPARQIVRETARQGADVQQQTDT
ASDDTPQTSAPNQRAAKKTGKTAKSGKTAAAAETAPARTTATRSRAHSEIAGVRISHPDR
VIDKSSGASKLELVQYYASIAEWMLPHLRERPVALVRAPEDIGGELFFQKHSQKLSIPHV
TQHEGLDPGHPPLITIDTAAALVGAAQMGTVELHTWNAVASNIEKPDRVVFDLDPDPSLG
WERMVEAAQLTRSLLDELGLKSFCKTSGGKGLHVIVPLAKQAGWDEVKAFSQAVAQHMAS
TLPQYFSAKMGAQNRKKKIFIDYLRNNRGSSTVAAFSVRARPGLGVSVPLAWDELDSTTS
GDQWNIRNVHERVDGLDNDPWADYAKTRQRITAAMKKRLGVA
NT seq 2829 nt NT seq  +upstreamnt  +downstreamnt
atgaacgaccgactcgacctctatcaccgcaaacgccgcttcgaggacacgccggagccg
gccggcgcggcggcccgcaagcgcgccgcgagcaagaccggcaagcgcgcaccgcgcgcc
gcgcccgacacgctgtcctacgtgatccaggagcaccacgcgcggcgtctgcactacgac
ttccggctcgaactgaacggcgcgctgctgtcgtgggcgattccgaagggaccgagcctc
gacccgtcggtcaaacggctcgcggtgcacgtcgaggaccatccgatcgaatacggtacg
ttcgagggcgagattccgcccggcaactacggcgcgggcacggtgatcgtgtgggatcgc
ggcacgtgggagccggcgggcagcgcggccgaagccgcgcgatcgtatgcggccggcaag
ctcaagttccatttgcacggcgagaagctgcacggcggctggacgctcgtacgtagccac
atgcgcggcagcggcgacaaggaacaatggctgttgatcaaggagcgcgacgagcaagcg
cgcgacgaaagcgactacgacgtgctcaaagagctgccgggcagcgcgctgaccgacggg
gcttcgaaaggcaggagaaccaagcaatcgaaagcggacacggcaacgccgcgcgacggc
acgtccgcgagcgcaggcaagccggccaggtccgcatcctcgcgccgcaccaccgatccc
aaacgccccgacatcgtcgcgacccgcagcgcgcaatctctgcgcgaactcgccgtgtcg
ccatcgatagaaggcgcgctcaaagccgcattgcccgcgagcctgaagccggaactggcc
acgctcgtcgacaccgcgccgccaggcgacgactggctctacgagatcaagttcgacggc
taccgcgtgcttgcgcgcatcgaccatgcatcgaaagcgaagggcggtgccgtcagtgtt
ttcacgcgcaacggcaacgactggaccgccaggttcagcaagcagatcgaggccttcgcg
gcgctcgagctgcaaagcgcgtggctcgacggcgaagcggtcgtgctcgacgaacgcgac
gtgccgaactttcagttgctgcaaaacgcgttcgacgcgcatcgtccgcaggacatcgtg
atctatctgttcgatctgccgtttctgaatggctacgacctgcgcggcgtaccgctcgaa
cagcgtcgcgcgattttgcgcgcgctgctcgaaggcgtcgacgatcgcgtgctgcgcttt
tcaaacgacttcgcgttcagcgccgacgagctgctcgagagcgcgtgcgacatggcactc
gaaggcatcatcggcaaacggcgcgacagcagctatgtgtcgggccgctcgccgtcgtgg
atcaagctgaagtgccggcgccgccaggagttcgtgatcggcggctattccgagccgagc
ggcagccgcgcggcgttcggcgcgctgctgctcggggtgtacgacggcgacggccggctg
cggtacgcggggcgcgtcggcaccggcttcgacgccgcgctgctgcgctcggtcaaacgg
gcgctcgacgcgcacccgagcaagcgcatgccgttcgcgagcgagccgcgcgagcgcagc
cgcacgcccgtgcattgggtcgatccggtgctcgtcgccgaatgcaacttcgccgaatgg
acgagcgacggcatcgtgcgccaggcgtcgttcgtcagcctgcgcgacgacaagccggcg
cgccagatcgtcagggaaaccgcccgacaaggagccgacgtgcaacagcaaaccgacacc
gcttccgacgatacaccgcaaacaagcgcgccgaatcagcgcgcggccaaaaagaccggc
aagaccgccaagagcggcaagacggccgccgccgccgaaaccgcgcccgcccgaaccacg
gcaacacgctcgcgcgcgcacagcgaaatcgccggcgtgcgcatctcgcatcccgatcgc
gtgatcgacaaaagcagcggcgccagcaagctcgaactggtgcagtactacgcatcgatc
gccgaatggatgctgccgcatctgcgcgagcggccggtcgcgctggtgcgcgcccccgag
gacatcggcggcgagctgttctttcagaagcacagtcagaagctgtcgattccgcacgtc
acgcagcatgagggactcgatccggggcatccgccgctgatcacgatcgacacggccgcc
gcgctggtcggcgccgcgcagatgggcaccgtcgaacttcatacgtggaatgcggtcgcg
tcgaatatcgaaaagcccgatcgcgtggtgttcgatctcgacccggatccgtcgctcggt
tgggaacgcatggtcgaggccgcgcaactgacccgctcgctgctcgacgaactgggcctg
aagtcgttttgcaagacgagcggcggcaagggcttgcacgtgatcgtgccactcgcgaag
caggccggctgggacgaagtgaaggctttctcgcaggcggtcgcgcaacatatggcgtcg
acgctgccgcagtacttcagcgcaaagatgggcgcgcagaatcgcaagaagaagattttc
atcgactatctgcgcaacaaccgcggctcgagcacggtggcggccttctcggtgcgcgcg
cggccggggctcggcgtgtcggtgccgctcgcgtgggacgaactcgacagcacgacgagc
ggcgatcaatggaacatccgcaacgtccacgagcgcgtggacggcctcgacaacgacccg
tgggccgactacgcgaagacccgtcagcgcatcaccgcggcgatgaaaaaacgtctgggc
gtcgcgtga

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