Stutzerimonas stutzeri DSM 4166: PSTAA_2160
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Entry
PSTAA_2160 CDS
T01976
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psr
Stutzerimonas stutzeri DSM 4166
Pathway
psr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSTAA_2160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psr03400
]
PSTAA_2160
Enzymes [BR:
psr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSTAA_2160
DNA repair and recombination proteins [BR:
psr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSTAA_2160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DNA_ligase_A_C
bpX3
Motif
Other DBs
NCBI-ProteinID:
AEA84048
LinkDB
All DBs
Position
complement(2302038..2303087)
Genome browser
AA seq
349 aa
AA seq
DB search
MCEVAYAEMTRQGVVRHSVFHGLRTDKPAEAITHERAKPVARAKPNVAGKADPLGSGRIK
ISNPERVIDPSSGITKIELARFYAQIAPWALPQLQNRPLALVRAPEGITGELFFQKHADK
LAIPHITQLDPALDPKHGALLVIDSAEALVGAAQMGTIELHSWNAVAPDLEHPDRFVLDL
DPDPALPWKRMLEATQLTQTLLDEIGLASFLKTSGGKGLHIVVPLDPVHDWSEVKSFSQA
IARHLAKLLPSHFSAVSGPKNRVGRIFIDYLRNSRGASTVAPYSVRAREGLPVSVPIHRD
ELADLKGANLWTVRNLLERLQELGDDDPWAAIGKTRQRLTKKIRDRLNA
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgaagtcgcctatgccgaaatgacccgccagggtgtggtgcgccactcggtgttc
cacggcctgcgaaccgacaagccggccgaggccatcacccacgagcgggccaaaccagtc
gccagggcaaagccgaacgtcgccggcaaggccgatcccctcggcagcggtcggatcaag
atttccaaccccgaacgggtcatcgaccccagcagcggcatcaccaagatcgaactggcc
cgcttctacgcgcagatcgccccctgggcgctgccgcaattgcagaaccggccgctggcg
ctggtccgcgcgcctgaaggcatcaccggcgagctgttcttccagaagcacgccgacaag
ctggccatcccgcatatcacgcagctggacccggcgctcgatcccaagcacggcgcgctg
ctggtgatcgacagcgccgaggcgctggtcggcgccgcgcagatgggcactatcgagctg
cacagctggaacgccgtggcgcccgatctcgagcaccctgaccgcttcgtgctggacctc
gaccccgatccggccctgccgtggaagcgcatgctcgaggcgacccagctgacccagacg
ctgctggacgagatcggcctggcatcgtttctcaagaccagcggcggcaaagggctgcac
atcgtcgtaccgctcgaccccgtgcatgactggagcgaggtgaaatccttcagtcaggcg
attgccaggcacctggcaaaactcctgccgtcccatttctccgcggtcagcgggccgaag
aaccgggtcgggcgcatcttcatcgactacctgcgcaacagccgtggcgccagcaccgtc
gcgccgtactcggtacgcgcccgcgagggtctgccggtttccgtacccatccaccgcgac
gagctggcggacctcaagggcgccaacctgtggacggtgcgcaacctgctggaacgcctg
caggaactgggtgacgacgacccctgggcggccatcggcaagacccgccagcgcctgacc
aaaaaaatacgcgaccgcctgaacgcctga
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