Stutzerimonas stutzeri DSM 4166: PSTAA_2161
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Entry
PSTAA_2161 CDS
T01976
Name
(GenBank) conserved hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psr
Stutzerimonas stutzeri DSM 4166
Pathway
psr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PSTAA_2161
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psr03400
]
PSTAA_2161
Enzymes [BR:
psr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PSTAA_2161
DNA repair and recombination proteins [BR:
psr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PSTAA_2161
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Tudor_3
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEA84049
LinkDB
All DBs
Position
complement(2303087..2304592)
Genome browser
AA seq
501 aa
AA seq
DB search
MALEDYQRMRDFAATPEPAGKARPKSRKSQALQYCIQKHDATRLHYDFRLELDGTLKSWA
IPKGPSLDPGVRRLAVHVEDHPLEYATFEGNIPEGHYGAGDVIVWDRGVWTPQGDPQEGY
RKGKLKFSLEGEKLAGSWNLVRTQMDGKKEQWFLIKSRDEAAREESEYDIVTAEPDSVLS
DRTLVPRKRGAKARVAETPPAPVKTPTKKRTPARRKAKVALEGAVPAELPEHFKPQLATL
VDTVPGGDWRYEIKFDGYRMLARIDAGEVRLFTRNGHDWTAKMPQQAAALAGLGLESGWL
DGEVVVPNEEGTPDFQALQNAFEAGRSGSILYYLFDMPYLNGMDLREVALEQRRAALREV
LERSDSELLRFSEDFTEQPDSILESACQMKLEGLIGKRAGSTYTSRRSSSWVKIKCSNRQ
EFIIVGYTQPKGTRTGFGALLLGLHDDNGELRYAGKVGTGFNHATLQSLHKKLKKLEIDK
SPLAKAPQQPMHVARSGSSRN
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcgaagattaccaacgcatgcgtgacttcgccgccacgccggaacccgccggc
aaggcacggccgaagtcccgcaagagccaggcgctgcagtactgcatccagaagcacgac
gccacgcgtctgcattacgacttccgcctggaactggacggcaccctgaagagctgggcg
attcccaaggggccaagcctggaccctggcgtgcgccggctggccgtacacgtggaagac
cacccgctggagtacgccacctttgaagggaacatccccgaagggcattacggtgccggc
gacgtgatcgtctgggaccgtggcgtgtggacgccacagggcgacccgcaggagggctat
cgcaagggcaagctcaagttcagcctggaaggcgagaagcttgccggcagctggaacctg
gtgcgcacgcagatggacgggaagaaggagcagtggttcctcatcaaatcccgtgacgag
gcggcgcgcgaggagagcgagtacgacatcgtcaccgccgagcccgacagcgtgctcagt
gaccgcaccctggtgccgcgcaagcgcggcgcgaaggcccgcgtggccgaaaccccgcct
gcgccagtcaagacacccaccaagaagcggacaccggccaggcgaaaggcaaaggtcgcg
ctcgagggggcggttccggccgagctaccggagcatttcaaaccgcagctggccaccctg
gtcgatacggtaccggggggggactggcggtacgaaatcaagttcgacggctaccggatg
ctcgcgcgcatcgacgccggcgaggtcaggctgtttacccgcaacggccacgactggacg
gcgaagatgccccagcaggccgcggcgcttgcgggactcgggctcgagtccgggtggctg
gatggcgaggtggtggtgccgaacgaggagggcacgccggacttccaggccttgcagaac
gctttcgaggcggggcgcagcggcagcattctctattatctgttcgacatgccttacctg
aacggcatggacctgcgcgaggtagcgctggagcagcgccgcgcagcgctgcgcgaggtg
ctggagcgcagtgacagcgagctgctgcgcttctccgaggacttcaccgagcagccggac
agcattctggaaagcgcctgccagatgaaactcgaagggctgatcggcaagcgcgctggc
agcacctacacctcgcgacgcagcagcagctgggtgaagatcaaatgcagcaaccggcag
gaattcatcatcgtcggctatacccagccgaagggtacccgcaccggtttcggcgcgctg
ctgctcggcctgcacgacgacaacggcgagctgcgttacgccggcaaggtcggcaccggc
ttcaaccatgcaacgctgcagagcctgcacaagaagctgaagaagctggaaatcgataaa
agcccgctggccaaggcaccccagcagccgatgcacgtggcgcgcagtggctcaagccgg
aactga
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integrated database retrieval system
