Stutzerimonas stutzeri DSM 4166: PSTAA_2778
Help
Entry
PSTAA_2778 CDS
T01976
Symbol
mfd
Name
(GenBank) transcription-repair coupling protein Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psr
Stutzerimonas stutzeri DSM 4166
Pathway
psr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSTAA_2778 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psr03400
]
PSTAA_2778 (mfd)
Enzymes [BR:
psr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PSTAA_2778 (mfd)
DNA repair and recombination proteins [BR:
psr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PSTAA_2778 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEA84657
LinkDB
All DBs
Position
2966281..2969718
Genome browser
AA seq
1145 aa
AA seq
DB search
MRLPPLPAASGKQHWGNLPGAALSLAIAEAASNAKRFTLLLTADSQSAERLQEELAFFAP
ELPVLHFPDWETLPYDLFSPHQDIVSQRIATLYQLPELSHGVLVVPITTALHRLAPKRFL
LGSSLVLDVGQKLDVEQMRLRLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSALPYRID
LFDDEIETLRTFDPENQRSIDMVESIRLLPAREFPLKKEAVTGFRARFRERFDVDFRRCP
IYQDLSTGITPAGIEYYLPLFYEETATLFDYLPEDSQVFSLPGIEQAAEQFWNDVRNRYE
ERRVDPERPLLPPAELFMPVEDCFARLKLWPRVVASQQDVEPGIGRERFPAQPLPELAIE
SKASEPLGKLRQFLDGFPGRVLFTAESAGRREVLLELLARLKLRPQEVEGWGGFLASEER
LAIAIAPLDEGLLLDEVALVAESPLFGQRVMQRRRREKSRDGGDNVIKNLTELREGAPVV
HIDHGVGRYQGLVTLEIEGQAQEFLLLQYADEAKLYVPVASLHLIARYTGSDDALAPLHK
LGSETWQKAKRKAAEQVRDVAAELLDIYARRAARQGYAFKDPQVDYETFAAGFPFEETPD
QQAAIDAVREDLLSAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAVLVPTTLLAQQ
HYNSFRDRFADWPVRVEVMSRFKSAKEVQNAITELADGKIDILIGTHKLLQDDVKFSNLG
LVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMSIAGMRDLSIIATPPARRL
SVRTFVMEANNPTIKEALLRELLRGGQVYYLHNDVKTIEKCAADLQTLVPEARIAIGHGQ
MRERDLEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIIIERADKFGLAQLHQLRGRVG
RSHHQAYAYLLTPPRKAMTDDAQKRLEAIANAQDLGAGFVLATHDLEIRGAGELLGEGQS
GQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARL
ILYKRIANAADEDGLKELQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGITKIDAGPQG
GRIEFSADTSVDPMVLIKLIQSQPNRYKFEGATLFKFQVPMERPEERFNTLEALLERLAP
NEQGS
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
ttgcgccttccccctctgcctgccgccagcggcaagcaacattggggcaatcttccagga
gcagcgctgagcctggcgattgccgaagcagccagcaacgccaaacgcttcacgctcctc
ctcaccgccgacagccagagcgccgagcgcctgcaggaagaactcgccttcttcgctccg
gagctgccggttctgcattttccggattgggaaacgctgccctacgacctgttctcgccg
catcaggacatcgtttcccagcgtatcgccacgctctaccagctgcctgaactgagccat
ggcgtgctggtagtgccgatcaccaccgccctacacaggctggcgcccaagcgctttctg
ctcggttcgagcctagtgttggatgttgggcagaagctggatgtcgagcagatgcgcctg
cgtctggaagcggccggctatcgctgcgtggacacggtctacgaacatggcgagttcgcc
gtgcgtggcgcgttgatcgatctgttccccatgggcagcgccctgccctaccgtatcgac
ctgttcgatgacgagatcgaaaccctgcgtaccttcgatccggagaatcagcgctccatc
gacatggtggagtcgatccgtctgctgccagcccgggaatttccgctgaaaaaggaagcg
gtcaccggcttccgggcacgtttccgcgagcgtttcgacgtcgacttccgtcgctgcccg
atctaccaggacctgtccaccggcatcacgcccgccggtatcgaatactacctgccgctt
ttctatgaggagacggcaaccctcttcgactatctgcccgaagacagccaggtgttttcc
ctgcccggcatcgagcaggccgccgagcagttctggaatgacgtgcgcaatcgctacgag
gagcgccgcgtcgaccccgagcgcccgctgctgccgccggccgagctgttcatgccggtg
gaagactgcttcgcccggctcaagctgtggccgcgcgtggttgccagccagcaggacgtg
gaacccggcatcggccgcgagcgcttccctgcgcagcccctgccagaactggcgatcgaa
tccaaggccagcgagccattgggcaagctgcgccagttcctcgacggtttcccggggcgc
gtgctgttcaccgccgaatccgcggggcgccgcgaagtgctgctggagctgctggcgcgc
ctgaagctgcgcccgcaggaagtcgaaggctggggcgggttcctcgccagcgaggagcgc
ctggcgatcgccatcgccccgctcgacgaaggcttgctgctggacgaagtcgccctggtc
gcggaaagcccgctgttcggccagcgcgtcatgcaacgccggcgtcgcgagaagagtcgc
gacggcggcgacaacgtcatcaagaacctcaccgagctgcgcgaaggcgcgccggtggtg
catatcgatcatggagtcggccgctatcaggggctggtcaccctcgaaatcgaaggccag
gcgcaggaattcctcctgctgcagtacgctgacgaggccaaactctacgtgccggtcgcc
agcctgcatctgatcgcccgctataccggcagcgacgacgccctggcgccactgcacaag
ctcggctcggaaacctggcagaaagccaagcgcaaggccgccgagcaggtgcgcgacgtg
gctgcagaactgctcgacatctacgcccgccgcgccgcgcgccagggctatgccttcaag
gacccgcaggtcgactacgaaaccttcgccgccggcttccccttcgaggagacgccggac
cagcaggccgccatcgacgcggtgcgcgaggacctgctttccgccaagccgatggaccgc
ctcgtgtgtggcgatgtcggcttcggcaagaccgaagtcgccatgcgcgccgcctttatt
gccgtgcacggcggcaagcaggtggcggtactggtgcccaccaccctgctcgcccagcag
cactacaacagcttccgcgaccgcttcgccgactggccggtgcgggtcgaggtgatgagc
cgtttcaagtccgccaaggaagtgcagaacgccattaccgagttggccgacggcaagatc
gacatcctcatcggcacccacaagctgctgcaggacgacgtcaagttcagcaacctgggc
ctggtcatcatcgacgaggaacaccgcttcggtgtgcgccagaaggagcagctcaaggcg
ctgcgcagcgaggtggacatcctcaccctgaccgccacgccgattccgcgcacactgaac
atgtccatcgccggcatgcgcgacctgtcgatcatcgccacgccaccggcgcgccggctg
tcggtgcgcaccttcgtcatggaggccaacaacccgaccatcaaggaagcgctgctgcgc
gagctgctgcgtggcggccaggtctattacctgcacaacgacgtgaagaccatcgagaag
tgcgccgccgacctgcagacactggtacccgaggcacgcatcgccatcggccacggacag
atgcgcgaacgcgacctcgagcaggtgatgagcgatttctaccacaagcgcttcaacgtg
ctggtggcctcgaccatcatcgaaaccggcatcgatgtgcccagcgccaacaccatcatc
atcgagcgcgccgacaagttcggcctggcccagctgcaccagctgcgcggccgcgtcggc
cgtagccaccaccaggcctatgcctatctgctcaccccaccgcgcaaggccatgaccgat
gatgcgcagaagcgtctggaagccatcgccaacgcccaggacctcggtgccggctttgtc
ctggccacccacgacctcgaaatccgcggtgccggcgagctgctcggcgaaggccagagc
gggcagatccaggccgtcggcttcaccctgtacatggaaatgctcgagcgtgcggtcaag
gccatccgcaagggcgaacaaccaaacctggagcagccgctcggtggcggcccggagatc
aacctgcgcctgccggcattgatccccgaggactatctgccggacgtgcacgcgcgcctg
attctctacaagcgcatcgccaacgccgccgacgaggacggtttgaaggaactgcaggtt
gagatgatcgaccgcttcggcctgttgcccgaaccgaccaagaacctggtgcgcctgacc
ctgctcaagctgcaggccgaaaagctgggcatcaccaagatcgacgccggcccgcagggc
ggacgcatcgagttctcggccgacacttcggttgacccgatggtgctgatcaagctgatc
cagagccagccgaaccgctacaagttcgaaggcgccacgctgttcaagttccaggtgccc
atggagcgtcccgaggagcgcttcaacaccctggaagcgctgcttgagcggctggcgccc
aacgagcaaggttcctag
DBGET
integrated database retrieval system
