Pelodiscus sinensis (Chinese soft-shelled turtle): 102443770
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Entry
102443770 CDS
T02980
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03030
DNA replication
pss03410
Base excision repair
pss03420
Nucleotide excision repair
pss03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102443770 (LIG1)
03410 Base excision repair
102443770 (LIG1)
03420 Nucleotide excision repair
102443770 (LIG1)
03430 Mismatch repair
102443770 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pss03032
]
102443770 (LIG1)
03400 DNA repair and recombination proteins [BR:
pss03400
]
102443770 (LIG1)
Enzymes [BR:
pss01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102443770 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
102443770 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102443770 (LIG1)
DNA replication proteins [BR:
pss03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102443770 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102443770 (LIG1)
DNA repair and recombination proteins [BR:
pss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102443770 (LIG1)
NER (nucleotide excision repair)
Other NER factors
102443770 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
102443770 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
102443770
NCBI-ProteinID:
XP_006133053
Ensembl:
ENSPSIG00000011945
UniProt:
K7FZW6
LinkDB
All DBs
Position
Unknown
AA seq
954 aa
AA seq
DB search
MMQRPITSFFQPMKGTKAEKETEKIRLPAEEDSTDQVSEAATVQRNGLSLHVDSPVKSAK
RPLRRFLESDSDEEVVMEEAQAEKEPKQDKSPKKTSNKQEHVQTPQSDLSMDSPSPSSSH
SAGDSPALSDSPAVGNADIPKRRTARKQIPKRKMELTISRENNSHEEPTAKRWREQQGPG
DEAGRGAKKEKDVEMQEVKDQHSEMEMAEDNGTLKEVAVNKGEDRGEGGIQKQPEPPQTT
RAISSFFAPKKAPVEKEGKEDKHAAVEPPSVPTSSTTASSDGNDGRAGSFSKLAVPVDPM
EYNPSKSSYNPFQDACWGHGQRVPYLAVARTFERIEEVSARLKNIETLSNLFRSVIALSP
SDILPCIYLCLNRLGPAYKGLELGIGETILMKAVAQATGRQLDQIKAEAQEKGDLGLVAE
SSRSNQRTMFTPPKLSAAGVFSKLQEIARMTGSASMNKKIDIIKGLFVACRHSEARYITR
SLGGKLRIGLAEQSVLSAIAHAVSLTPPGQAFPPEVLDAGQGKSAEARKAWLEEQTQTLK
QTFCELPNYDIIVPVLLEHGVQSLPQHCKITPGIPLKPMLAQPTKGIGEVLKRFEEAAFT
CEYKYDGERAQIHILENGDVHIYSRNQEDNTSKYPDIISRIPKVKKGNVRSCILDAEAVA
WDAEKRQIQPFQVLTTRKRKDVEAAEIKVQVCLYAFDMLYLNGESLVKEPFSKRRQLLHE
SFVEMEGEFLFATSMDTCSMDEISEFLDQSIKDSCEGLMVKTLDVDATYEIAKRSHKWLK
LKKDYLEGVGDTLDLVVIGAYLGKGKRAGMYGGFLLACYDEETEEYQSICKLGTGFTEES
LEKHYSFLKDHVLEKPRPYYRWDSSIEPNHWLAAVQVWEVKCADLSISPVHKAAIGLVDE
EKGISLRFPRFLRVRDDKKPEEATTSSQVAELYKLQQQIQNQQSVEKTEDEDFY
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagcgccccatcacgtcatttttccagcccatgaaagggacaaaggctgaaaag
gagacggagaagatcagactaccagcagaggaggactcaaccgaccaagtatcagaggca
gccacagtgcagagaaatggcctgagcctccatgtggactccccagtgaaatctgccaag
aggcccctgcgccgattcttggagagtgacagtgatgaggaagtggtcatggaggaagct
caagcagagaaggagcccaagcaggacaaaagccccaagaaaaccagcaataagcaggag
catgtgcaaactcctcagtctgatctctccatggatagtccctcgccaagcagcagccac
tcggctggagatagcccagcactttctgactcccctgctgttggcaatgctgacatcccc
aaacgcagaacagctcgcaaacagatccccaaacgcaaaatggagctgacaatcagtaga
gagaacaacagccatgaggagccaactgccaagagatggcgagagcaacaaggtccagga
gatgaggcaggcaggggagcaaagaaagagaaagatgtggaaatgcaagaggtgaaagat
cagcattctgagatggaaatggctgaagataatggcactttgaaagaggtggctgtgaac
aagggagaagacagaggtgaagggggaatccagaagcagcccgaaccaccccagaccacc
agagccatctccagcttctttgcccccaagaaggcgccagtggaaaaggaaggaaaggaa
gataaacatgcagcagtggagccaccatctgtcccaactagctcaacgacagcaagcagt
gatgggaatgatggcagagctggcagtttctccaagctagctgtgccagtggaccccatg
gagtacaatccttcgaagagcagctacaatccattccaggatgcctgctgggggcatggt
cagagggtcccctacctggctgtggctcggacctttgagcggatcgaggaggtttctgcc
cgactgaagaacattgagaccctgagcaacctcttccgctcagtgatcgccctgtcgccg
tccgacatcctgccctgcatctacctctgtcttaaccgcctgggccctgcctacaagggt
ctggagctgggcattggcgagaccatcctcatgaaggctgttgcacaggcaacaggccgc
cagctggatcagatcaaagccgaggcccaggaaaagggggatctgggcttggtagcggag
agcagccgtagcaaccaacgcaccatgttcacgccgcccaagctgagtgctgccggggtc
ttcagcaagctacaggagattgccaggatgacaggaagtgcttcaatgaacaagaagatt
gacatcatcaaagggctgtttgtggcctgccggcactcggaagctcgctacatcactcgg
tccctgggtgggaagcttaggattgggctggcggagcagtcagtgctgtcagccattgcc
catgctgtgtctctcactcccccaggacaagcatttcccccagaggtgctggatgctggc
cagggcaaatctgcagaggcacgcaaagcctggctggaggagcagactcagaccctcaaa
cagactttctgtgagctgcctaactatgacatcatagtgcctgtcctgctggagcatgga
gtgcagagcctgccacagcactgcaagatcaccccagggatcccgctgaaacccatgctg
gcccagcccaccaagggtattggggaggtgctgaagcgatttgaggaggctgccttcacc
tgcgagtacaagtatgatggagagcgagcccagatccacatcctggagaatggagatgtg
cacatctacagccgcaaccaggaggacaatacctccaaatacccggacatcatcagccgc
atccccaaggtgaagaagggcaatgtgcggtcatgtatcctggacgctgaggctgtggcc
tgggatgctgagaagaggcagattcaacccttccaggtccttaccacacggaagcgaaag
gacgtggaagctgctgagatcaaagtacaggtgtgtctgtacgcctttgacatgctgtac
ctcaatggagagtccctggtgaaggagccgttctccaagcgccgtcagctgctgcatgag
tcttttgtggagatggagggggagttcttatttgccacctccatggacacatgcagcatg
gatgagatctctgaatttcttgaccagtccatcaaggactcctgcgagggcctcatggtc
aagacgctggatgtggatgccacttacgagattgccaaaagatcccacaaatggctgaag
ctgaagaaggattacctggaaggtgttggtgacacactggacttggtagtgattggtgcc
tatctgggcaagggcaagcgagcaggcatgtatggtggctttctgctggcgtgctatgac
gaggagactgaggagtaccagagcatctgtaagcttgggactggtttcacagaggagagc
ctggagaaacattacagctttctgaaggaccatgtgctggagaaaccacggccctattac
cgctgggacagcagcattgagcccaaccattggctggcagcagtgcaggtgtgggaagtg
aagtgtgctgacctgtccatctcacctgtgcacaaggcagccataggcctggtggatgag
gagaagggcatctccctgcgctttccccggttcctgcgtgtgcgtgatgacaagaagcct
gaggaagccaccaccagctcccaggtggctgaactctacaaactgcagcagcagattcag
aaccaacagtcagtggagaagactgaggatgaggacttctactag
DBGET
integrated database retrieval system
