Pelodiscus sinensis (Chinese soft-shelled turtle): 102451631
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Entry
102451631 CDS
T02980
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
pss
Pelodiscus sinensis (Chinese soft-shelled turtle)
Pathway
pss03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pss00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102451631 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pss03400
]
102451631 (LIG4)
Enzymes [BR:
pss01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102451631 (LIG4)
DNA repair and recombination proteins [BR:
pss03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102451631 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Ribosomal_S5_C
DUF6190
Motif
Other DBs
NCBI-GeneID:
102451631
NCBI-ProteinID:
XP_006115625
Ensembl:
ENSPSIG00000001504
UniProt:
K7F0E0
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MSCPPTSQSSPRRSVASVVPFADLCSILERIQKCKSRPEKTKYFKEFLDSWRKFHDALHK
KERDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTP
TGSHGDAGDFAMIAYFVLKPRCPKQGKLTIEQVNELLNSVAGNNAAKRKDLVKKNLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSLFHPDASELHNVTTDLEKVCRLLHDPAVSL
SDVSIMLFSAFKPMLAAIANVKQIEKQMNNQSFYIETKLDGERMQMHKDGDVYKYFSRNG
YDYTQQFGASPLEGSLTPFIHNVFKNNIQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSDLQTCFCVFDVLLVNDQKLGHEVLSKRYEILNELFTPMIGRIHIVHKTQASTRKEVV
DALNEAIDNREEGIMIKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGL
RGGMMSHFLCAVAETSPPGEKPSVFHSVCRVGSGYTMKELYDLGLKLAKHWKPFRKRDPP
CNILCGTEKPEVYIEPCNSVIVQIKAAEIVASDMYKTDCTLRFPRIEKIREDKEWHECMT
LDFLEQLRGKASGKLASKHLDMGDDEPQEKKRKTVPKVKKIIGIMDQFKAPDLSNVNKVS
NIFEDVEFCVMTGTQNHSKSELESKVAESGGNVVQNPGPDTYCVIAGIENVRVKNIILSN
KHDVVRAEWLLQCFETKMFVPWQPAFMIHMSPDTKQHFACEYDCYGDSYTADTDLTQIKE
VFSRINENDEKMPLDMIADLEERYLWNSSPLSMFRQNTIYLDLYAAVNDPSTKTHGTMLS
IRALELRFHGAKVVSQLKEGVSHVVMGEDRTRVKEIKALRRTFERKFKILSELWVTDSIK
EGKLQYENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgcccacctacttcacaatcttcccctaggcgaagtgtagcatcagtagttccc
tttgcagatctatgctcaattttagaacgaatacagaaatgtaaatcccggccagagaaa
accaagtattttaaggaatttttagattcatggaggaaatttcatgatgctcttcacaaa
aaagagagagatgtcacagactctttttatccagcaatgcgtcttattctcccgcaattg
gaaagagagagaatggcttatggaattaaagaaaccatgcttgctaagctgtatattgaa
ctgctcaatttacccaaagaaggaaaagatgccctaaaacttttaaattatagaacacct
actggctcacatggagatgctggagactttgcaatgattgcctattttgtattgaaacca
aggtgcccaaaacaagggaaactgacaatagaacaggtgaatgaactcttgaattcagtt
gctggtaataatgctgccaaaagaaaggacctagtaaagaaaaatcttcttcagttaata
actcagagctcagcactcgaacaaaagtggctaatcaggatgattataaaggatctaaaa
cttggtgttagccagcaaaccatattttcccttttccatcctgatgcttccgagttacac
aatgtcacaactgacctagagaaagtttgcagactacttcatgaccctgctgtgtcactc
agtgatgtttccatcatgttgttttctgcctttaaacctatgcttgctgctattgctaat
gtcaagcaaatcgagaaacaaatgaataaccagagtttctacatagaaactaaactagat
ggtgaacgtatgcagatgcataaagatggtgatgtatacaagtatttctcccgtaatggg
tatgattatactcagcagtttggtgcttctccccttgaaggttcattaactccatttatt
cataatgtgtttaaaaataatatacaaaactgcattcttgatggtgaaatgatggcctac
aatcccaatacacaaacttttatgcagaagggaaacaaatttgacataaaaagaatggta
gatgattctgatctgcagacatgtttttgtgtgtttgatgtattattggttaatgatcag
aaattgggtcatgaagtactaagcaaaagatatgagattctaaatgaactcttcacacca
atgataggcagaattcacatagtgcataaaacacaagctagcactaggaaagaagtagtt
gatgctctaaatgaagcaatagataacagagaagaaggaatcatgataaaagatcctatg
tccatttacaagccagacaagcgtggagaaggctggttaaaaatcaaacctgaatatgtc
aatggactcatggatgaactagaccttttaattgttggtggttactggggcaaaggtttg
cgtggtggcatgatgtctcactttttgtgtgctgttgctgagacttcccctcctggtgaa
aaaccatctgtatttcattctgtttgtcgtgttggttctggttacactatgaaggagctg
tatgatcttggtttgaagttggccaaacactggaaaccttttcgtaaaagagatcctcca
tgtaacattttatgtgggactgagaagcctgaagtttacattgagccttgtaactcagtc
atagttcagattaaggcagcggagattgttgctagtgatatgtacaaaactgactgcacg
ctgcgattccctcgaattgagaaaataagagaggacaaagagtggcatgaatgtatgact
ttggatttcttagaacagctcaggggtaaagcttcagggaagctagcatcaaagcacctt
gatatgggagatgatgaaccacaagaaaagaaacggaaaactgtaccgaaggtaaagaaa
ataattggaatcatggatcagtttaaagcccctgatctttccaatgtaaacaaggtttct
aatatatttgaagacgttgaattttgtgttatgactggaactcaaaaccattccaaatct
gaactggaaagtaaagtagcagaaagcggtggcaatgtggtgcaaaatcctggaccagac
acttattgtgttattgcaggaattgagaatgtcagagtaaaaaatatcatattgtccaac
aagcatgatgttgtgagagcagagtggcttttacagtgttttgaaacaaaaatgtttgta
ccatggcagcctgccttcatgattcacatgtctccagatacaaaacaacattttgcatgt
gagtatgactgttatggtgacagctacacagcagatacagatctgacccaaataaaggaa
gtattctcaagaattaatgaaaatgatgagaagatgcctttggacatgattgctgactta
gaagaacgttatttgtggaacagctctcctctcagtatgttcaggcaaaataccatttat
ctggacctttatgctgctgttaatgacccgagtaccaagacccatggaacaatgctatca
attagagctttggagctccgtttccatggagcaaaagtagtctcgcagctaaaggagggt
gtgtcccatgtagttatgggagaagatcgtacccgtgtgaaagagataaaagcacttagg
agaacatttgagagaaaatttaaaatcctatctgagctgtgggtaacagattctataaag
gaggggaagttacagtatgaaaatcaatatctaatttaa
DBGET
integrated database retrieval system