Pseudoxanthomonas suwonensis 11-1: Psesu_1418
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Entry
Psesu_1418 CDS
T01403
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psu
Pseudoxanthomonas suwonensis 11-1
Pathway
psu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Psesu_1418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psu03400
]
Psesu_1418
Enzymes [BR:
psu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Psesu_1418
DNA repair and recombination proteins [BR:
psu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Psesu_1418
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Roughex
Motif
Other DBs
NCBI-ProteinID:
ADV27265
UniProt:
E6WT36
LinkDB
All DBs
Position
1565260..1568058
Genome browser
AA seq
932 aa
AA seq
DB search
MSLVDYRRKRSFDRTREPEPGKPAPRGQRPIFVVQLHHASRRHYDFRLQVGDALKSWAVP
KGPSYDPSVKRMAVEVEDHPLDYAGFEGDIPKGEYGGGHVARFDHGVWSTAGDPEEQLAK
GHLRFELFGDRLKGGWHLVRSGKPARQPQWLLFKDKDGWAGTLEADDLLAEVTPPPEADR
KRAGSGKAKPRRLAAVPAPRARRKDWKKRALALDGSRAADAPDGPFQPQLARLGQAAPEG
EQWLHEIKWDGYRILATVEEGEVRLWSRNALEWTDRVPEIRDAVKALGLRSAALDGELIA
GSGTREDFNLLQATLSGERPGTLAYVLFDLLHVDGVDITEASLLERKELLQAVLEKGPAH
LAYSSHIPGDGRQAIALAAERHFEGIISKRADRPYRPGRGDDWRKTKQLASDEFAIVGYT
APQGSRTGFGSLLLARPDAKHGWRYVGRVGTGFSDEMLRELAPRLAKDTSSKPTAHVDTM
DTALRRATWVPPRMVVEVFYRGIGGQQLLRQASLKTLRPDKDIEDLYDSDRGPGVAEETV
MAAKGKAATKKTAATKGGAGKTATAKTATKKAPAREAVAKGAPTKAAKKAVKAPAEKAAA
KAAKTSASKIVGKTPGAKTGASRAATPTKASAGTSRKRATTPQDWPRLSSPTKVLFPDIR
ATKQEVWDYYAAVMDHLLPEIVGRPLSVIRCPSGTGRQCFFQKHLTAGLERVASVKLKEE
SGTNAEYLVVEDEGGLMELVQFNALEFHPWGSHADNPDHADRVVFDLDPGPDVPFAEVKK
AAVDIRRQLEALELASFLRVTGGKGLHVVVPLAPGCDWELTKRFAHGFADALARSEPDRF
VATATKSLRNRRIFVDYLRNGRGATAVASYSLRARPGAPVAMPIAWNELARLPRADVYTM
RDVPERLRRRRKDPWEGIDGLRQNLARWARDE
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggtcgattaccggcgcaagcgcagcttcgaccgtacccgcgaaccggaaccg
ggcaagcctgcgccgcgcgggcagcgcccgatcttcgtggtccagctccaccacgccagt
cgtcgccactacgacttccgcctgcaggtcggcgatgcgctcaagagctgggccgtgccc
aaggggcccagctatgacccctcggtcaagcgcatggcggtggaagtcgaggaccatccg
ctggactacgccggcttcgagggcgatatcccgaagggcgagtacggcggcggccacgtg
gcccgcttcgaccatggcgtgtggtccaccgcgggcgacccggaggagcagctggccaag
ggccacctgcgtttcgagctgttcggcgaccgcctcaagggcggctggcacctggtgcgc
tcgggcaagcccgctcgccagccgcagtggctgctgttcaaggacaaggatgggtgggcc
ggcacccttgaggccgacgacctgctggccgaggtcacgcccccgccggaagccgaccgc
aagcgcgccggcagcggcaaggccaagcccaggcgcctggccgcggtgccggcgccgcgt
gcgcggcgcaaggactggaagaagcgcgcgctggcactggacggttcgcgcgccgccgat
gcgcccgacggtccattccagccgcagctggcacgcctgggccaggccgcgccggagggc
gagcagtggctgcacgagatcaagtgggatggctaccgcatcctcgccaccgtcgaggag
ggcgaggtgcggttgtggtcgcgaaacgcgctggagtggaccgaccgcgttcccgagatc
cgcgacgcggtgaaggcgctgggcctgcgcagcgcggcgctggatggcgagctgatcgcc
ggcagcggcactcgcgaggacttcaacctgctgcaggccacgctgtccggcgagcgaccg
ggcacgctggcctacgtgctgttcgacctgctccacgtcgacggcgtggacatcaccgag
gcatccctgctggagcgcaaggaactgctgcaggcggtgctggagaagggtcccgcgcac
ctggcctacagctcgcacatcccgggcgacggccgccaggcgatcgcgctggctgccgag
cgccacttcgaggggatcatctccaagcgcgccgatcgtccgtaccggccgggacgcggc
gacgactggcgcaagaccaagcagctggccagcgacgagtttgccatcgtcggctatacc
gcgccgcagggcagccgtaccggtttcggttcgctgctgctggcgcggccggatgcgaag
catggctggcgctatgtcggccgggtaggcaccggcttcagcgacgagatgctgcgcgag
ctggcaccgcgcctggcgaaggacaccagcagcaagccgaccgcgcacgtggacaccatg
gacaccgcgctgcgtcgcgcgacctgggtgccgccgcgcatggtggtcgaggtcttctat
cgtggcatcggcgggcagcagctgctgcgccaggcctcgttgaagaccttgcgcccggac
aaggacatcgaagacctgtacgacagcgaccgcggcccgggtgtcgcggaggagacggta
atggcggcaaaggggaaggcagccacgaagaagactgcggcgacgaaggggggggcgggg
aagaccgccaccgcgaagacggccacgaagaaggcgccggcacgcgaggcagttgccaag
ggcgcacccacgaaggctgcgaagaaggcagtaaaggctcctgcggagaaggccgccgcg
aaggccgcgaaaacatcggccagcaagatcgtaggaaagactcccggcgcgaagacgggc
gcctcccgcgccgccacgccgacgaaggccagcgccggcaccagtcgcaagcgcgcgacc
acgccgcaggactggcccaggctttccagccccaccaaggtcctgttcccggacatccgc
gccaccaagcaggaggtatgggactactacgcggcggtgatggaccacctgctgcctgag
atcgtcggacgtccgctctcggtgatccgctgtccgtccggaacgggcaggcagtgtttc
ttccagaagcacctgaccgccgggctggaacgggtggcctcggtgaagctcaaggaggag
agcggcaccaacgccgaatacctggtggtggaggacgagggtgggctgatggagctggtg
cagttcaatgcgctggagttccatccctggggctcgcatgccgacaaccccgaccatgcc
gaccgcgtggtgttcgacctggatcccggcccggacgtgccgttcgccgaggtcaagaag
gccgcggtcgatatccgccgccagctggaagcgctggagctggcgtcgttcctgcgcgtg
accggcggcaagggcctgcacgtggtggtgccgcttgcgccgggctgcgactgggaactg
accaagcgcttcgcccatggcttcgccgatgcgctggccaggtccgaaccggaccgcttc
gtcgcgaccgcgaccaagagcctgcgcaaccgccgcatcttcgtcgactacctgcgcaac
ggtcgcggcgccaccgcggtggcttcctactcgctgcgtgcgcggccgggcgcaccggtc
gcgatgccgatcgcctggaacgagctggcgcgactgcctcgcgccgacgtctacacgatg
cgggacgtgccggaacgcctgcggcgcaggcgcaaggatccctgggagggaatcgatgga
ctgcgccagaacctcgcgcgctgggccagggacgagtag
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