Phytohabitans suffuscus: Psuf_037730
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Entry
Psuf_037730 CDS
T06545
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psuu
Phytohabitans suffuscus
Pathway
psuu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psuu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Psuf_037730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psuu03400
]
Psuf_037730
Enzymes [BR:
psuu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Psuf_037730
DNA repair and recombination proteins [BR:
psuu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Psuf_037730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BCB86460
UniProt:
A0A6F8YK48
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All DBs
Position
4095036..4095938
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AA seq
300 aa
AA seq
DB search
MPPKEQRIRVEVDGQSLELSNLDKVLYPAAGFTKGEIINYYTRVAPALLPHLRGRALTRI
RFPNGVEGQSFFEKNKPGGTPDWVRVETLPVPGSTKDRETIDYVVADDLPTLVWLANLAA
LELHTPQWRIDEQPDLMVVDLDPGAPAGLRECCTVAVLMRDRLARDGLTAYPKTSGKKGM
QLSCPIAGTQPAEEVSAYAHRIAEELERANPKVVTSKMTKRLRSGKVFIDWSQNSAAKTT
VAPYSLRAQAQPTVSTPLSWDEVEAGGARAFTPDEVLERVEEYGDLLEALLTPGPALPSK
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgccacctaaggagcagcggatccgggtcgaggtcgacggccagtcgctggagctgtcc
aacctggacaaggtgctctatccggccgccggcttcaccaaaggcgagatcatcaactac
tacacgcgggtcgcgcccgcgctgctgccgcacctgcggggccgggcgctgacccggatc
cgcttcccgaacggcgtcgagggccagtcgttcttcgagaagaacaagcccgggggtacg
ccggactgggtgcgggtcgagacgctgccggtgcccgggtcgaccaaggaccgggagacg
atcgactacgtcgtcgccgacgacctgccgacgctggtgtggctggccaacctcgccgcg
ctggagctgcacactccacagtggcggatcgacgaacagcccgacctgatggtggtcgac
ctcgacccgggcgccccggccgggctgcgcgagtgctgcacggtggcggtgctgatgcgc
gaccggctcgcgcgggacgggctgaccgcctacccgaagacctccggcaagaagggcatg
cagctgagctgcccgatcgcgggcacgcagccggccgaggaggtctccgcgtacgcgcac
cggatcgccgaggagctggagcgggccaacccgaaggtggtcacgtcgaagatgaccaag
cggctgcggtcgggcaaggtgttcatcgactggagccagaacagcgccgccaagaccacg
gtcgcgccgtactcgttgcgcgcccaggcgcagccgaccgtctccacgccgctgagctgg
gacgaggtggaggcgggcggggcgcgggcgttcaccccggacgaggtgctggagcgggtc
gaggagtacggcgacctgctggaggcgctgctcacacccgggccggcgttgcccagtaag
taa
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