KEGG   Pseudomonas sp. VLB120: PVLB_14550Help
Entry
PVLB_14550        CDS       T02897                                 

Gene name
ligD
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psv  Pseudomonas sp. VLB120
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psv00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    PVLB_14550 (ligD)
Enzymes [BR:psv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PVLB_14550 (ligD)
DNA repair and recombination proteins [BR:psv03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PVLB_14550 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
3200091..3202559
Genome map
AA seq 822 aa AA seqDB search
MAKPLQEYQRKRDFKATPEPAGKRARARPAHGLQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGAGDVIVWDRGIWEPEGDPREA
YAKGKLRFALQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDDQARSEADYSIVEALPDSVL
SDRTLLPRRPTNARPAKPRRKAKPSALPDKLQPQLATLVDSPPSGDWHYEVKFDGYRILA
RIDADDVRLFTRNGHDWSAKLSRQVEALKALGLDSAWLDGEMVVVDENGGTDFQALQNAF
DTEHDDNITYYLFDLLYLSGKDLRELPVQDRRATLAKLLEHNTSDTLKFSEDFNQPVDSL
LASACRLGLEGLIGKRADSVYMSRRSSDWIKLKCKQRQEFVIVGYTDPKGSRHGFGALLL
ALHDKDSGQLRYAGKVGTGFSAATLASIRDRLKPLQTATPPLPKPPTGADARGVHWLKPR
LLAEVAYAQMTRSGIVRHSVFHGLRDDKPATAIDLERAVPAKTATTAQPNGLGKLRLTHP
ERVIDPTSGTTKRQIAQYYAQVADWLLPQLKDRPVALVRAPDGLDGELFFQKNAGQLHIP
HVVSYSKAEAGQAAMVLNRADSLLGAVQMNMLELHTWNATDKDFDRPDRFVLDLDPDPAL
PWKAMLEATQLTLTLLDELGLKTFLKTSGGKGMHLVVPLTRRAGWEHVKEFSHAIVEHMA
NLFPDRLSAVSGPKNRVGKIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELTQLK
GANQWDIGNLHERLAQVDDPWAEMSKTRQSITARMRKQLGLA
NT seq 2469 nt NT seq  +upstreamnt  +downstreamnt
atggccaagcccctgcaggagtaccagcgcaagcgcgacttcaaagccacccccgagccg
gctggcaagcgcgcacgcgcacgccccgcccatgggctgcagtactgcattcagaagcat
gacgccagccacctgcattatgactttcgcctggaactcgatggcaccttgaaaagctgg
gcgatccccaagggcccctcactcgaccccaaggtccggcgcctggctgtgcatgtggag
gatcacccgctggactacgccaatttcgaaggccacatccccgagggacactacggtgcc
ggggacgtgatcgtctgggatcggggcatctgggagcccgagggcgacccgcgcgaagcc
tatgccaaaggcaagctgcgctttgccctgcaaggcgagaagctgtcgggtgtctggaac
ctgttccgcacccatctggccggcaagaaagagcagtggatgctggtcaagtcccatgac
gaccaggcccgcagcgaagccgattacagcatcgtcgaggccctgccggacagcgtgctc
agcgaccgtaccctgctgccgcggcgcccgaccaacgccagacccgccaagcccaggcgc
aaggccaaacccagcgccctgccggacaagcttcaaccccagttggccaccctggtcgat
tcgcctcccagcggcgactggcactatgaagtgaagttcgatggctaccgcatcctggcc
cgcatcgacgcagacgatgtgcgcctgttcacccgcaatggtcacgactggagcgccaag
ctatcgcgccaggtcgaggcactcaaggcgctcgggctcgattcggcttggctggatggc
gagatggtagtggtcgacgagaacggcggcaccgacttccaggccctgcagaacgccttc
gacaccgaacacgacgacaacatcacctattacctgttcgacttgctgtacctgagcggc
aaggacctgcgtgaactgcccgtgcaagaccgccgggcaaccctggccaaactgcttgag
cacaacacatcggacacgcttaagttttccgaggacttcaaccaaccggtcgactcactg
ctcgccagcgcctgccggctcggactggaaggcctgatcggcaaacgtgccgacagcgtc
tacatgagccggcgcagcagcgactggatcaagctcaagtgcaagcagcgccaggaattc
gtgatcgttggctacaccgatcccaaaggcagccgtcacggcttcggcgccctgctgctg
gccctgcacgacaaagacagcggccagttgcgctacgccggcaaggtaggcaccggtttc
agcgccgccaccctggcgagcatccgcgaccgtctgaaaccacttcagaccgccacgcca
cccttgcccaagccgccgaccggggccgatgcccgcggcgtgcactggctaaaaccgcgc
ctgctggccgaggtcgcctacgcccagatgacccgcagcggcatcgtgcgccactcggta
ttccacggcctgcgcgacgacaagcctgcaaccgccatcgacctggagcgcgccgtgccc
gccaagaccgcaacgacggctcagccgaacgggctgggcaaattacgcctcacccacccc
gaacgtgtcatcgacccgaccagcggcaccaccaaacgccagatcgcgcagtactacgca
caggtcgccgactggctgctgccacaactcaaggaccgtcccgtggcgctggttcgcgca
ccggacggtcttgacggtgaattgttctttcagaagaacgccggtcagttgcacattccc
catgtcgtcagctacagcaaggccgaagccggccaggcggcgatggtgctcaaccgcgcc
gacagcctgctgggagcggtgcagatgaacatgctggaacttcacacctggaacgccacc
gacaaggacttcgaccgccccgaccgcttcgtcctggatctggaccctgacccggcactg
ccgtggaaagccatgctcgaggccacccagctgaccctcaccctgctcgatgagttgggc
ctgaagacgttcctcaagaccagtggcggcaagggcatgcacctggtcgtgccgctgacc
cgcagagccggatgggagcacgtgaaggagttcagtcacgctatcgtcgaacacatggcg
aacctcttcccggatcggctcagcgccgtgtccgggcccaaaaacagggtgggtaagatc
ttcatcgactacctgcgcaacggcaaaggcgccaccaccgtggccgcctattcgctgcgc
gcgcgcgaaggcctgccggtgtcggtaccgatctggcgcgaggaattgacgcagctcaag
ggggccaaccaatgggacatcggcaacctgcacgaacggctggcgcaggtggacgacccg
tgggccgagatgagcaagacccggcagtcgatcaccgcacgcatgcgcaagcaactgggg
ctcgcttga

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