Pseudomonas sp. VLB120: PVLB_14550
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Entry
PVLB_14550 CDS
T02897
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
psv
Pseudomonas sp. VLB120
Pathway
psv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
psv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PVLB_14550 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psv03400
]
PVLB_14550 (ligD)
Enzymes [BR:
psv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PVLB_14550 (ligD)
DNA repair and recombination proteins [BR:
psv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PVLB_14550 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AGZ35694
UniProt:
A0AA86AFK8
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All DBs
Position
3200091..3202559
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AA seq
822 aa
AA seq
DB search
MAKPLQEYQRKRDFKATPEPAGKRARARPAHGLQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGAGDVIVWDRGIWEPEGDPREA
YAKGKLRFALQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDDQARSEADYSIVEALPDSVL
SDRTLLPRRPTNARPAKPRRKAKPSALPDKLQPQLATLVDSPPSGDWHYEVKFDGYRILA
RIDADDVRLFTRNGHDWSAKLSRQVEALKALGLDSAWLDGEMVVVDENGGTDFQALQNAF
DTEHDDNITYYLFDLLYLSGKDLRELPVQDRRATLAKLLEHNTSDTLKFSEDFNQPVDSL
LASACRLGLEGLIGKRADSVYMSRRSSDWIKLKCKQRQEFVIVGYTDPKGSRHGFGALLL
ALHDKDSGQLRYAGKVGTGFSAATLASIRDRLKPLQTATPPLPKPPTGADARGVHWLKPR
LLAEVAYAQMTRSGIVRHSVFHGLRDDKPATAIDLERAVPAKTATTAQPNGLGKLRLTHP
ERVIDPTSGTTKRQIAQYYAQVADWLLPQLKDRPVALVRAPDGLDGELFFQKNAGQLHIP
HVVSYSKAEAGQAAMVLNRADSLLGAVQMNMLELHTWNATDKDFDRPDRFVLDLDPDPAL
PWKAMLEATQLTLTLLDELGLKTFLKTSGGKGMHLVVPLTRRAGWEHVKEFSHAIVEHMA
NLFPDRLSAVSGPKNRVGKIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELTQLK
GANQWDIGNLHERLAQVDDPWAEMSKTRQSITARMRKQLGLA
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcccctgcaggagtaccagcgcaagcgcgacttcaaagccacccccgagccg
gctggcaagcgcgcacgcgcacgccccgcccatgggctgcagtactgcattcagaagcat
gacgccagccacctgcattatgactttcgcctggaactcgatggcaccttgaaaagctgg
gcgatccccaagggcccctcactcgaccccaaggtccggcgcctggctgtgcatgtggag
gatcacccgctggactacgccaatttcgaaggccacatccccgagggacactacggtgcc
ggggacgtgatcgtctgggatcggggcatctgggagcccgagggcgacccgcgcgaagcc
tatgccaaaggcaagctgcgctttgccctgcaaggcgagaagctgtcgggtgtctggaac
ctgttccgcacccatctggccggcaagaaagagcagtggatgctggtcaagtcccatgac
gaccaggcccgcagcgaagccgattacagcatcgtcgaggccctgccggacagcgtgctc
agcgaccgtaccctgctgccgcggcgcccgaccaacgccagacccgccaagcccaggcgc
aaggccaaacccagcgccctgccggacaagcttcaaccccagttggccaccctggtcgat
tcgcctcccagcggcgactggcactatgaagtgaagttcgatggctaccgcatcctggcc
cgcatcgacgcagacgatgtgcgcctgttcacccgcaatggtcacgactggagcgccaag
ctatcgcgccaggtcgaggcactcaaggcgctcgggctcgattcggcttggctggatggc
gagatggtagtggtcgacgagaacggcggcaccgacttccaggccctgcagaacgccttc
gacaccgaacacgacgacaacatcacctattacctgttcgacttgctgtacctgagcggc
aaggacctgcgtgaactgcccgtgcaagaccgccgggcaaccctggccaaactgcttgag
cacaacacatcggacacgcttaagttttccgaggacttcaaccaaccggtcgactcactg
ctcgccagcgcctgccggctcggactggaaggcctgatcggcaaacgtgccgacagcgtc
tacatgagccggcgcagcagcgactggatcaagctcaagtgcaagcagcgccaggaattc
gtgatcgttggctacaccgatcccaaaggcagccgtcacggcttcggcgccctgctgctg
gccctgcacgacaaagacagcggccagttgcgctacgccggcaaggtaggcaccggtttc
agcgccgccaccctggcgagcatccgcgaccgtctgaaaccacttcagaccgccacgcca
cccttgcccaagccgccgaccggggccgatgcccgcggcgtgcactggctaaaaccgcgc
ctgctggccgaggtcgcctacgcccagatgacccgcagcggcatcgtgcgccactcggta
ttccacggcctgcgcgacgacaagcctgcaaccgccatcgacctggagcgcgccgtgccc
gccaagaccgcaacgacggctcagccgaacgggctgggcaaattacgcctcacccacccc
gaacgtgtcatcgacccgaccagcggcaccaccaaacgccagatcgcgcagtactacgca
caggtcgccgactggctgctgccacaactcaaggaccgtcccgtggcgctggttcgcgca
ccggacggtcttgacggtgaattgttctttcagaagaacgccggtcagttgcacattccc
catgtcgtcagctacagcaaggccgaagccggccaggcggcgatggtgctcaaccgcgcc
gacagcctgctgggagcggtgcagatgaacatgctggaacttcacacctggaacgccacc
gacaaggacttcgaccgccccgaccgcttcgtcctggatctggaccctgacccggcactg
ccgtggaaagccatgctcgaggccacccagctgaccctcaccctgctcgatgagttgggc
ctgaagacgttcctcaagaccagtggcggcaagggcatgcacctggtcgtgccgctgacc
cgcagagccggatgggagcacgtgaaggagttcagtcacgctatcgtcgaacacatggcg
aacctcttcccggatcggctcagcgccgtgtccgggcccaaaaacagggtgggtaagatc
ttcatcgactacctgcgcaacggcaaaggcgccaccaccgtggccgcctattcgctgcgc
gcgcgcgaaggcctgccggtgtcggtaccgatctggcgcgaggaattgacgcagctcaag
ggggccaaccaatgggacatcggcaacctgcacgaacggctggcgcaggtggacgacccg
tgggccgagatgagcaagacccggcagtcgatcaccgcacgcatgcgcaagcaactgggg
ctcgcttga
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