KEGG   Pseudomonas sp. VLB120: PVLB_14550
Entry
PVLB_14550        CDS       T02897                                 
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
psv  Pseudomonas sp. VLB120
Pathway
psv03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:psv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    PVLB_14550 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psv03400]
    PVLB_14550 (ligD)
Enzymes [BR:psv01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     PVLB_14550 (ligD)
DNA repair and recombination proteins [BR:psv03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     PVLB_14550 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: AGZ35694
UniProt: A0AA86AFK8
LinkDB
Position
3200091..3202559
AA seq 822 aa
MAKPLQEYQRKRDFKATPEPAGKRARARPAHGLQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKVRRLAVHVEDHPLDYANFEGHIPEGHYGAGDVIVWDRGIWEPEGDPREA
YAKGKLRFALQGEKLSGVWNLFRTHLAGKKEQWMLVKSHDDQARSEADYSIVEALPDSVL
SDRTLLPRRPTNARPAKPRRKAKPSALPDKLQPQLATLVDSPPSGDWHYEVKFDGYRILA
RIDADDVRLFTRNGHDWSAKLSRQVEALKALGLDSAWLDGEMVVVDENGGTDFQALQNAF
DTEHDDNITYYLFDLLYLSGKDLRELPVQDRRATLAKLLEHNTSDTLKFSEDFNQPVDSL
LASACRLGLEGLIGKRADSVYMSRRSSDWIKLKCKQRQEFVIVGYTDPKGSRHGFGALLL
ALHDKDSGQLRYAGKVGTGFSAATLASIRDRLKPLQTATPPLPKPPTGADARGVHWLKPR
LLAEVAYAQMTRSGIVRHSVFHGLRDDKPATAIDLERAVPAKTATTAQPNGLGKLRLTHP
ERVIDPTSGTTKRQIAQYYAQVADWLLPQLKDRPVALVRAPDGLDGELFFQKNAGQLHIP
HVVSYSKAEAGQAAMVLNRADSLLGAVQMNMLELHTWNATDKDFDRPDRFVLDLDPDPAL
PWKAMLEATQLTLTLLDELGLKTFLKTSGGKGMHLVVPLTRRAGWEHVKEFSHAIVEHMA
NLFPDRLSAVSGPKNRVGKIFIDYLRNGKGATTVAAYSLRAREGLPVSVPIWREELTQLK
GANQWDIGNLHERLAQVDDPWAEMSKTRQSITARMRKQLGLA
NT seq 2469 nt   +upstreamnt  +downstreamnt
atggccaagcccctgcaggagtaccagcgcaagcgcgacttcaaagccacccccgagccg
gctggcaagcgcgcacgcgcacgccccgcccatgggctgcagtactgcattcagaagcat
gacgccagccacctgcattatgactttcgcctggaactcgatggcaccttgaaaagctgg
gcgatccccaagggcccctcactcgaccccaaggtccggcgcctggctgtgcatgtggag
gatcacccgctggactacgccaatttcgaaggccacatccccgagggacactacggtgcc
ggggacgtgatcgtctgggatcggggcatctgggagcccgagggcgacccgcgcgaagcc
tatgccaaaggcaagctgcgctttgccctgcaaggcgagaagctgtcgggtgtctggaac
ctgttccgcacccatctggccggcaagaaagagcagtggatgctggtcaagtcccatgac
gaccaggcccgcagcgaagccgattacagcatcgtcgaggccctgccggacagcgtgctc
agcgaccgtaccctgctgccgcggcgcccgaccaacgccagacccgccaagcccaggcgc
aaggccaaacccagcgccctgccggacaagcttcaaccccagttggccaccctggtcgat
tcgcctcccagcggcgactggcactatgaagtgaagttcgatggctaccgcatcctggcc
cgcatcgacgcagacgatgtgcgcctgttcacccgcaatggtcacgactggagcgccaag
ctatcgcgccaggtcgaggcactcaaggcgctcgggctcgattcggcttggctggatggc
gagatggtagtggtcgacgagaacggcggcaccgacttccaggccctgcagaacgccttc
gacaccgaacacgacgacaacatcacctattacctgttcgacttgctgtacctgagcggc
aaggacctgcgtgaactgcccgtgcaagaccgccgggcaaccctggccaaactgcttgag
cacaacacatcggacacgcttaagttttccgaggacttcaaccaaccggtcgactcactg
ctcgccagcgcctgccggctcggactggaaggcctgatcggcaaacgtgccgacagcgtc
tacatgagccggcgcagcagcgactggatcaagctcaagtgcaagcagcgccaggaattc
gtgatcgttggctacaccgatcccaaaggcagccgtcacggcttcggcgccctgctgctg
gccctgcacgacaaagacagcggccagttgcgctacgccggcaaggtaggcaccggtttc
agcgccgccaccctggcgagcatccgcgaccgtctgaaaccacttcagaccgccacgcca
cccttgcccaagccgccgaccggggccgatgcccgcggcgtgcactggctaaaaccgcgc
ctgctggccgaggtcgcctacgcccagatgacccgcagcggcatcgtgcgccactcggta
ttccacggcctgcgcgacgacaagcctgcaaccgccatcgacctggagcgcgccgtgccc
gccaagaccgcaacgacggctcagccgaacgggctgggcaaattacgcctcacccacccc
gaacgtgtcatcgacccgaccagcggcaccaccaaacgccagatcgcgcagtactacgca
caggtcgccgactggctgctgccacaactcaaggaccgtcccgtggcgctggttcgcgca
ccggacggtcttgacggtgaattgttctttcagaagaacgccggtcagttgcacattccc
catgtcgtcagctacagcaaggccgaagccggccaggcggcgatggtgctcaaccgcgcc
gacagcctgctgggagcggtgcagatgaacatgctggaacttcacacctggaacgccacc
gacaaggacttcgaccgccccgaccgcttcgtcctggatctggaccctgacccggcactg
ccgtggaaagccatgctcgaggccacccagctgaccctcaccctgctcgatgagttgggc
ctgaagacgttcctcaagaccagtggcggcaagggcatgcacctggtcgtgccgctgacc
cgcagagccggatgggagcacgtgaaggagttcagtcacgctatcgtcgaacacatggcg
aacctcttcccggatcggctcagcgccgtgtccgggcccaaaaacagggtgggtaagatc
ttcatcgactacctgcgcaacggcaaaggcgccaccaccgtggccgcctattcgctgcgc
gcgcgcgaaggcctgccggtgtcggtaccgatctggcgcgaggaattgacgcagctcaag
ggggccaaccaatgggacatcggcaacctgcacgaacggctggcgcaggtggacgacccg
tgggccgagatgagcaagacccggcagtcgatcaccgcacgcatgcgcaagcaactgggg
ctcgcttga

DBGET integrated database retrieval system