Pseudoliparis swirei (Mariana hadal snailfish): 130198387
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Entry
130198387 CDS
T09868
Name
(RefSeq) LOW QUALITY PROTEIN: collectin-12-like
KO
K10062
collectin sub-family member 12
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
130198387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pswi04131
]
130198387
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
pswi04091
]
130198387
Membrane trafficking [BR:
pswi04131
]
Endocytosis
Phagocytosis
Opsonins
130198387
Lectins [BR:
pswi04091
]
C-Type lectins
Group 2: Type II membrane receptors (Asialoglycprotien and DC receptors)
Scavenger receptor with a CTLD (SRCL)
130198387
BRITE hierarchy
Motif
Pfam:
VHS
Collagen
Lectin_C
SH3_1
SH3_9
SH3_2
Filament
UIM
CoV_S2
SH3_10
Motif
Other DBs
NCBI-GeneID:
130198387
NCBI-ProteinID:
XP_056277513
LinkDB
All DBs
Position
8:6569100..6613563
Genome browser
AA seq
1293 aa
AA seq
DB search
MPMRCCGCDFNQQLHNGTVLXTTMKDDFADEEEVQSFGYKRFGIQEGTECTKCKNDWALR
AAIALLYVLCALLTIAVAVLGYKVVQRMDNVTEGMQNYGGKINAVETDLKKLDDQTGEKT
VNATSNIKTFKSDLDALQNQLNDIALRATRNRDLLDGLQITGDDMQDGHVSLKSFMQGNE
ASLRGVNQTLASYSGMIDELQTDTARLQTEIQGQVKVQSQTQVGISALNITQSQQRNLLS
TLQKTVEGAGQAVQKLNNDYQGLQQTARQTRADTQWLKEKVQNLQVLAANNSALARSNEE
SLDDLGAQLSTLASQIQNTSTLNEEHGQNLHELMDHQRDHDNATSSKFDEVESRLDRHEN
DMDRVTGNMSFASQLLGAISSDLNGLRSCAETVMRHSDLLLELNDSVTAAKADGKELSAQ
HDEMAARLDKEVSNLSVVMEEMKLVDSKHSKLITNFTILQGPPGPRGLRGDKGPQGTVGQ
PGQKGDKGDKGMPGLVGNRGQKGPGGPPGVMGPKGPVGARGLPGTKGSRGSGGRPGNSGE
KGDLGAMGIPGRDGLSGLPGPPGPQGPRGTAGPAGLDGLRGPVGPIGPPGPPGLPGLPAP
ASPLSKQPQPTRPAKIPETPKAPQPLKPPQPPKPADEPEGTVSRQIQPSVATAPVPGCPA
EFRKFGDSCYYFSSGAQRLNFDESNQFCTVMSSLMLIINDNEEQQFVRDAIAGKGYFWLG
LTDKEEENVWKWVDGTEPVFKKWKPGQPDNWTHGHEEGEDCAGLIHNAYWNDFYCTDRIG
FICERASDPMPLFATNPFDQDVEKATSELNTAEDWGLILDICDKIGQARTGPKECLRSIM
RRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSREFASEVSNVLNKGHPKVCEKLKAL
MVEWAENFRNDPQLSLISAMIKNLREQGVTFPAVGSQAAEQAKASPALVAKDPSTPNKKE
DDDLAKAIELSLKEQHPQTSLSSLYPNTSGLLSLHKSDGRKVRAIYDFEAAEDNELTFKS
GEIITILDDSDSNWWKGETYQGVGLFPSNFVTADLTAEPEMMKTEKKTVQFSEDIQVETI
EPQQEPVFIEEDKMDQLLQMIQSADPTDNQADSSELLQLEGACNQMGPLIDQKLEDIDRK
HSELSDLNVKVMEALSLYAKLMNEDPVYAMYAKLQSQQYYMQQPANAAQQVYPGPPPAGP
YAMSGAVAQGYMEQLPAGTPIPGQPAPSDAHMYMGQPPVYTAAPPADLQSYQHPASGPGP
APGMTANYSAPSGPSIAPSSDASQAPYSEKALL
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atgccaatgcgatgctgcggatgtgacttcaatcaacagcttcacaacggcacagtcctg
taaaccacaatgaaagacgattttgctgacgaggaggaggtgcagtcctttggttataag
agatttggaatccaggagggtacggagtgcaccaagtgcaaaaatgactgggcgctgagg
gcggctatcgccctgctctacgtgctctgtgccctgctcaccatcgccgtggccgtcctc
ggatacaaagtggtccagagaatggacaatgtcacagagggcatgcagaattatggaggc
aagatcaatgctgtggagacagacttaaagaaactagatgatcagacaggagagaagaca
gtgaatgccacgagtaacatcaagaccttcaagtccgatctggacgcactacagaaccaa
ctgaacgatattgccctcagagcgaccagaaacagagatctgctggacgggcttcagatc
acgggcgacgacatgcaggacggccacgtctcgctgaagagtttcatgcagggcaacgag
gcctcgttgcgcggggtcaaccagacattggcctcctacagcggcatgattgacgaactc
cagacggacactgcgcggctccagacagagatacagggccaggtcaaggtgcagagtcag
acccaggttggtatcagtgcactaaacatcacgcaatcccagcagcgcaatctgctcagc
acgctgcagaagacggtggagggcgctggccaggcggtgcagaagctgaacaatgactat
cagggtctgcagcagacggccagacagacccgggctgacacacagtggctgaaggaaaag
gtccagaacctccaggtgttggcagccaataactcagccctggcccgttccaatgaggaa
tctctggatgacttgggggctcagctcagcacactggccagccagatccagaacacctcc
actctcaacgaggagcacggccagaacctgcatgagctgatggaccaccagagagaccac
gataacgccacctcgtcgaagtttgacgaggtggaatcgaggctggacagacatgagaat
gacatggaccgcgtgaccgggaacatgagcttcgcctcgcagctcctcggtgccatcagc
tccgacctgaatggcctgaggtcgtgcgccgagacggtgatgcgacattcggacctgctg
ctggagctgaacgatagtgtgacggcggccaaggcggatggcaaagagctaagcgcgcag
cacgatgagatggcagccaggctggacaaggaggtcagcaacctctccgtggtgatggag
gagatgaagctggtggacagcaagcactcgaagctcatcaccaacttcaccatcctgcag
ggtccaccaggtccacggggcctcaggggggataagggtccacagggaacagtgggccag
cccggacaaaagggagataagggagacaaagggatgccaggtttggtgggaaatagggga
cagaaaggtcctggtggaccaccaggtgtgatgggtccaaagggtcctgtcggggctcgg
ggtcttccagggactaaaggatcgagagggtctggaggtcgacctggaaactctggtgaa
aaaggtgaccttggggctatggggattcctggtagggatggactctcagggttgccaggg
ccaccagggccacaggggcccagaggaacagcaggaccggcaggactcgatgggcttcgc
gggcctgttggacccatcggccctcctggtcctccaggtctaccagggctacccgcgcct
gcatctccactttcaaagcagcctcagcccactcggccggctaagatccctgaaaccccc
aaagcaccccaacccctcaaaccccctcaaccccccaaaccagcagatgaaccagaaggc
accgtgtctcggcagatccagccctctgtcgccactgctccagtgcctggttgcccagct
gagttcagaaagtttggagacagctgctattacttctcttctggtgctcagaggctcaac
tttgacgagtccaaccagttttgtaccgtcatgtcatctctaatgctcattatcaacgac
aatgaggaacagcaatttgtgagagatgcaattgcaggaaaaggctatttctggctgggt
cttactgacaaggaggaggaaaatgtttggaaatgggtggatggaactgaacctgttttc
aagaagtggaagcctggccagcctgataactggacccacggccacgaggaaggagaggac
tgtgctggcctcatccacaatgcctactggaacgatttctactgcactgaccgcatcggt
ttcatctgtgaacgtgcctctgacccgatgcctctgttcgcgacgaacccatttgaccaa
gatgttgagaaagcaaccagtgagctgaacacagctgaggactggggcctcattctggac
atttgtgataaaatagggcaggcacgcactgggccgaaagaatgtctccgctctataatg
agaagagtcaaccataaggatcctcatgtggccatgcaggcactgactctccttggtgct
tgtgtctcaaactgtgggaagatattccacttggaggtttgctccagagagtttgccagt
gaagtcagtaacgtcctaaacaagggccaccccaaagtgtgtgagaagctgaaagccctg
atggtcgagtgggccgagaacttccgcaacgatccccaactcagtctgatctcagcaatg
atcaagaatctacgggagcagggtgttactttcccagcggtggggtcccaggctgccgag
caagcaaaggccagccccgctttagtggcaaaggatccctccaccccaaacaaaaaagaa
gatgacgatttggccaaagccattgagctgtcgttgaaggagcagcatccgcaaacctcc
ctgtcgagcctttaccccaacacctccggcctgctctccttgcacaagtccgacggcagg
aaagtccgcgccatctacgactttgaggccgctgaggacaacgagctcaccttcaagtcg
ggagaaatcatcaccatcctggacgatagtgactccaactggtggaaaggggaaacgtac
cagggagtggggttgttcccctccaactttgtcacagctgacctcactgctgagcctgag
atgatgaagacggagaagaagacggtacagttcagtgaggacatccaggtggagaccata
gagccccaacaagagccggtatttatagaagaagacaaaatggaccagctactgcagatg
atccagagtgcagatcccacggacaaccaggcggacagcagtgagctgctccagctggaa
ggtgcctgcaatcagatggggcccctcattgaccagaagttggaggatatagacaggaag
cactctgagctgtcggacctgaacgtgaaggtgatggaagctctgtctctgtacgccaag
ctgatgaatgaagatcccgtctacgccatgtatgccaagctccagagccagcagtactac
atgcagcagcctgccaacgcagcacagcaggtctatccgggtccgcctccagcaggtccg
tacgccatgagcggcgccgtggcgcagggctacatggagcagcttccagctggaaccccc
atacctggtcagccagctcccagtgacgctcacatgtacatgggccagccgccggtctac
accgcagctccaccggcagacctccagtcctaccagcacccggccagcggccctggcccc
gcccccggcatgacggcgaactacagcgccccctctggcccgagcatagcaccgtcatca
gacgcctcgcaggccccttactcagagaaggccttgctatag
DBGET
integrated database retrieval system
