Pseudoliparis swirei (Mariana hadal snailfish): 130201767
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Entry
130201767 CDS
T09868
Symbol
col5a2a
Name
(RefSeq) collagen, type V, alpha 2a
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
pswi
Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
pswi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130201767 (col5a2a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pswi00536
]
130201767 (col5a2a)
Glycosaminoglycan binding proteins [BR:
pswi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130201767 (col5a2a)
BRITE hierarchy
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
130201767
NCBI-ProteinID:
XP_056282853
LinkDB
All DBs
Position
2:complement(4246862..4290321)
Genome browser
AA seq
1495 aa
AA seq
DB search
MESVHIRTFLFLAVSVAQVLLVRSQDGNSGDDMSCTADSQVYTNRDIWKPEPCRICVCDN
GQVLCDEIQCDELTNCEKMVIPDGECCPVCQSNPSTGRGGQETFGGGERIYKGPKGEPGE
VPLVTGIRGHPGPMGPPGYPGDRGSRGNKGRPGLRGSPGYDGEPGIPGQPGEPGPPGPPS
HPGGLGSQMAGVMQGKNSPQAMLTGSRGEAGTRGRLGPSGTPGQAGPQGSHGDVGDPGHM
GPSGQRGPAGPPGKPGEDGEAGKSGNSGEAGFSGSQGGRGFPGTPGPPGLKGHRGHGGII
GQKGETGTVGSKGANGPSGPLGAPGPMGPAGMPGERGRSGSGGVAGKRGMPGNLGKPGPM
GPLGLSGATGYPGTPGMKGQPGPTGVRGPGGQQGQRGETGHLGRAGAVGLMGPMGMDGGP
GNKGPVGNLGAQGQGGHAGPHGPPGPQGSTGQPGIKGQLGNIGVGGFKGESGPKGESGLS
GSQGVLGPQGEEGKRGQRGDSGTLGPVGPVGERGAPGNRGFPGADGLPGPKGALGDRGTS
GPPGPKASVGDPGRTGEPGLPGARGLTGTPGVQGAEGKPGALGATGEDGRPGPAGSIGNR
GPAGIMGGPGPKGFNGDPGKTGEQGSAGVLGQRGPPGKDGEVGPAGPSGPFGVAGERGEQ
GPPGVNGFQGLPGNQGPPGESGKPGDQGIPGELGVVGQIGPRGERGIPGERGELGTTGLQ
GPRGIAGAPGPDGPKGSPGPAGALGDAGPPGLQGMPGERGISGSPGPKGDRGSLGEKGSE
GTAGNDGARGVPGPVGPLGPAGISGEKGEPGPKGPHGPPGSRGMTGSRGDPGPIGAVGFS
GTPGPDGQPGVKGEPGEPGQKGDSGSSGPQGLSGAHGPPGPTGVAGLKGGRGTQGAPGPT
GFPGSAGRVGPPGPTGPLGEAGPLGPPGKEGPLGLRGDHGSPGRQGERGPAGPSGSLGDK
GDSGEDGPTGPDGPPGPDGTTGQRGIVGLPGQRGERGMPGLPGPGGPPGKLGSIGTSGDK
GPSGRVGSPGANGPRGDPGPDGPAGSDGPPGKDGVLGQRGDRGDSGPEGFLGSQGLPGTP
GPVGATGDAGRRGNAGSRGPVGPPGSAGKRGLGGPQGPRGDKGDLGDHGERGQKGHRGFT
GLQGLPGSPGTTGEQGAPGIIGPSGARGPPGPIGPPGKEGYIGQSGPMGPPGTRGISGEI
GPEGPPGEGGPAGPPGPPGPPMAAMDDLFGHQDYDFGGPPPPEFNEDEAMPNSNGSAIVP
VDPGVQATLKALSSQINSMKSPDGSRKHPARTCDDLKRCYPEKKSGEYWVDPNQGSVEDA
IKVHCNMDTGETCISANPASIPRKVWWSSSRNKPVWFGADINRGTHFTYGNKEQSANSVT
VQMTFIRLLSKEASQTITYNCKNSVGYKDKKTGNYKKAVILKGSNDLELKAEGNNRFRYT
VVEDSCTQANGNWGKTVFEYRTQKTARLPIVDIAPVDIGGPDQEFGIDIGPVCFL
NT seq
4488 nt
NT seq
+upstream
nt +downstream
nt
atggagtctgtgcatataaggacttttctttttctggcggtctccgtggctcaagtcttg
cttgtgaggagtcaagatgggaacagtggagacgacatgagctgcacggcggacagccag
gtgtacaccaacagggacatctggaagccggagccgtgccggatctgcgtgtgtgacaac
gggcaggtcctctgcgacgagatccagtgcgacgagctgaccaactgcgagaagatggtc
atccccgacggagagtgctgcccggtgtgtcagtccaacccgtcgaccggcagaggcgga
caggagacgttcggaggtggagagaggatctacaagggtccgaagggagaacccggagag
gtccctcttgtcaccggtatcagaggccaccctggacccatggggccacccggctatcca
ggagacagaggatccagaggaaacaaaggaagacctggactgagaggctctccgggttat
gatggagagcccggtataccaggtcagcccggtgaacctggacctcccggacctccatcg
cacccaggaggcctcgggtcccagatggccggagtgatgcaagggaaaaactcacctcaa
gccatgttgactggctccaggggggaggccggaacaagaggacgtcttgggccaagtgga
acacctggtcaagctggaccccaaggatctcacggagatgtcggcgatcccgggcatatg
ggtccaagtggacaaaggggaccggctggccctccagggaaaccaggtgaagatggagaa
gcaggcaaatcaggaaatagcggagaggcgggattctctggatcacagggaggcagaggg
tttccaggaactcctgggcctcctggactaaagggtcacaggggtcacggtgggataatt
ggccaaaaaggtgaaactggaacggttggatccaagggtgctaacggaccttctggccca
ttgggagctcctggacccatgggtcctgctgggatgccgggagagagaggacgctctgga
tctggtggtgtagcgggtaaacgtggtatgcccggtaacctcggaaagcctggtccaatg
ggtccgttgggtctcagcggtgcgactggatacccaggaaccccaggaatgaagggacaa
ccgggcccgaccggagtccgaggtccaggaggccaacaaggacagagaggagagaccggc
catctgggccgagctggagcggttggcctcatgggacccatgggtatggatggtgggccg
ggtaacaaaggaccagtgggtaaccttggtgctcaaggtcaaggcggccatgctggaccc
catggcccaccaggacctcagggaagcactggtcagcctggtatcaaaggacagctgggc
aacatcggagtcggagggtttaaaggagagtctggacccaaaggagaatctggtctgtca
ggctctcagggagtgctcggacctcagggcgaagaaggaaagcgaggacaacgcggagac
tccggcaccctgggccccgtcggccccgttggagagagaggagctcccggtaaccgggga
ttccccggtgctgatgggttgccaggaccaaagggcgctctaggagatcgtggaacatct
ggccccccggggcccaaagcttccgtaggagacccggggcggacaggagaacctggtctt
ccaggtgcaaggggtctgaccgggacccctggagtccagggagcagagggaaagccagga
gcattgggagctacaggtgaagacggccgtccgggccccgcagggtccattggaaaccgg
ggaccagcaggaatcatgggcgggccgggccccaagggcttcaacggcgacccaggaaag
acaggagaacaaggatctgcaggagtgctgggtcaaagaggtcctcctggaaaagatgga
gaggttggccctgctggcccctctggcccatttggtgtcgcaggagaaagaggagagcag
ggtcctcccggtgtgaatggattccagggtttgcctggaaatcaaggcccacctggagaa
tctggaaaaccaggcgaccaaggtattcccggagagctcggtgttgtgggtcagattgga
ccgaggggagaacgtggtattcctggagagagaggagagctgggtaccactggtctgcag
ggccctaggggtatcgctggtgcacctggtccagatggaccaaagggtagtcctggtccc
gctggggcactcggtgacgcgggtcctccaggtcttcagggaatgcccggagagaggggc
atctctggctctccagggccgaaaggtgacagaggatcacttggtgagaaaggatcagaa
ggtacagctggaaatgatggtgcaagaggagtcccgggtcctgttggcccgctaggacct
gctggaatcagtggtgagaagggagaacctggacccaaaggaccacatggacccccagga
tccagagggatgacaggatccagaggtgaccctggacccattggtgctgttggattttct
ggaactcctggtcctgatggccaaccgggggtgaagggagagcctggagagccaggccag
aaaggagactctggatcatcaggacctcaaggcttgtctggtgctcacggacctcctggg
ccaactggtgttgctggactgaaaggcggaagaggaacacagggagcaccgggcccgact
ggtttccctggatctgctgggcgagtcggcccaccaggcccaacaggtccacttggagaa
gccggacctcttggacctccagggaaagagggtcctcttggtctgcgtggagaccacgga
tcccccggaagacaaggagagcgtggaccagcgggaccatccggcagcctcggagacaaa
ggagactctggagaagacggacccacgggtcccgatggtcctccaggtccagatggaact
acaggacagagaggcattgtgggtcttcctggtcagagaggagagcgcgggatgccaggc
cttccaggacccggggggcccccaggaaaactgggatcaataggaacatctggagacaaa
ggcccttcaggtcgagttggttcccctggggccaacggacctcggggtgatcccggtcct
gatggtcctgcaggatctgatggcccaccaggcaaagatggggttctaggacaaagagga
gaccgaggagattctggtccagaaggttttctcggttcccagggacttcctggcacccca
ggccctgtgggtgcaacaggtgatgctggaaggagaggaaacgccggctcaagaggacct
gttggtccacctggctcggctggaaagagaggattagggggaccccaaggaccaagaggg
gataagggtgacctgggagatcacggagagagagggcagaagggacatcgaggcttcact
ggtctgcagggtcttccaggatctccaggtacaacaggtgaacagggagctccaggaatc
attggaccaagcggagcgagggggcctcccggacctattggacctcctggaaaggaaggg
tacattggacagtcgggaccgatgggacctcctggaacccgtggaatcagtggagaaatt
ggaccagagggccctcctggagagggtggacccgcaggcccacctggtcccccaggacct
cccatggccgctatggacgacctcttcggccatcaggattacgacttcggcggccctcct
cctcccgagttcaacgaggacgaggccatgcccaacagcaacggctccgccatagtgccc
gtggaccccggcgtccaggccaccctgaaggccctcagcagccagatcaacagcatgaag
agccctgacggcagcaggaaacaccccgccaggacctgcgacgacctgaagagatgctac
cccgagaagaagagtggggagtactgggtggatccaaaccaaggcagcgtggaggacgcc
atcaaagtgcactgcaacatggacaccggagagacctgcatctccgccaaccccgccagc
atacctcgcaaagtgtggtggagctcttccaggaacaaacccgtgtggttcggagccgac
atcaaccgtggaacacatttcacttacggcaacaaggaacagtcggccaactctgtcaca
gttcagatgactttcatccgcctgctctccaaagaggcatctcagaccatcacctacaac
tgcaagaactccgtaggctacaaggacaagaagacgggcaactataagaaagccgtaatc
ctcaagggttccaatgacctggagctcaaagcagaagggaacaaccgcttcagatacacg
gtggtggaggactcctgcacacaagcaaatggcaactggggcaagacagtgtttgagtac
aggacacagaaaactgcgagacttcctattgtggatattgcccccgtggacattggcggc
ccggaccaagagttcggcatcgatatcgggcccgtgtgcttcttgtaa
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