Paenibacillus swuensis: SY83_12925
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Entry
SY83_12925 CDS
T04884
Name
(GenBank) DNA polymerase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pswu
Paenibacillus swuensis
Pathway
pswu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pswu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SY83_12925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pswu03400
]
SY83_12925
Enzymes [BR:
pswu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SY83_12925
DNA repair and recombination proteins [BR:
pswu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SY83_12925
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
ANE47021
UniProt:
A0A172TJ02
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All DBs
Position
complement(2930469..2931359)
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AA seq
296 aa
AA seq
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MCAAKGKKGVVIVEGCEITVSNPDKYLWPDQQITKADYLSKLAALSPYLLKYCDNRYLTT
IRWPNGIDGKSFYQKNCPEPTPEFVSTASLDGIDYVNLDSLPTLLWLGNLACLEFHPSFN
YINDPLPAEWVIDIDPSLEVEPRIMEAAYLVGEVLDSLKIQAVPKTSGATGVQIYVPIER
GITFDELRKIGQFIGEFLVKSHPNLFTIERLKKNRGDLIYIDYLQHYSGKTLSAPYTPRA
RPFAPVSTPLKWEELKMGITAQDFHLFNIQERLHTYGDLIQEVPAQNLYSILQHLK
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgctgctaaaggaaagaaaggcgttgtcatcgttgaaggctgtgaaattaccgta
tccaacccggataaatatttatggcccgatcaacagatcaccaaggcggattacctttcc
aagctggccgcgttgtcgccttatttattgaagtattgcgacaatcggtatttgacaacc
atccgttggccgaacgggattgacggaaagtctttctatcagaaaaattgccctgagcct
acacctgaattcgtcagcacagcttccttggacggcattgattatgtaaatctggactct
ctcccgaccctgttatggcttgggaatttggcctgtctggaatttcacccctcctttaat
tacatcaacgatcccctgcctgccgaatgggtgattgatatcgacccttcccttgaagtc
gaaccccgcatcatggaagccgcttatcttgttggcgaagtgctcgattcactaaagatt
caggcagtaccaaagacgtcaggcgccaccggcgtccagatttatgtcccgatcgaacgc
ggcatcactttcgacgaattgcggaaaatcgggcaattcatcggagaatttctggtcaag
tcccacccgaacctattcacgattgaacgcttgaagaagaaccgaggcgacctcatttat
atcgattatttacagcattattccggcaaaaccttgtccgccccctatacccctcgggca
cgccctttcgcgccggtgtcgactccgcttaaatgggaggaactaaagatgggcattacc
gcgcaagacttccacctgtttaatatccaggaacgattacatacatacggggacctcatt
caggaggtccccgctcagaatctgtattctattctccaacatctgaagtaa
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