Psychromonas sp. CNPT3: PCNPT3_11815
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Entry
PCNPT3_11815 CDS
T02515
Name
(GenBank) 23S rRNA Gm2251-methyltransferase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psy
Psychromonas sp. CNPT3
Pathway
psy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCNPT3_11815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psy03019
]
PCNPT3_11815
03400 DNA repair and recombination proteins [BR:
psy03400
]
PCNPT3_11815
Enzymes [BR:
psy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCNPT3_11815
Messenger RNA biogenesis [BR:
psy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCNPT3_11815
DNA repair and recombination proteins [BR:
psy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCNPT3_11815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
SNF2-rel_dom
HTH_64
Motif
Other DBs
NCBI-ProteinID:
AGH82299
UniProt:
M4U7S0
LinkDB
All DBs
Position
complement(2799149..2801059)
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AA seq
636 aa
AA seq
DB search
MYNKLQKYFGFDSFREGQEPVIKALLNAQSAAAIFPTGSGKSLCYQLPALCLPHLTLVVS
PLLALIQDQLDFLHQKGISAASIQSMQSAAQSADVYRQVSEGNIKILFISVERLNSERFR
LFLKTIRISLLVVDEAHCISEWGHNFRPDYLKLAQYRKEFNIAQVLLLTATATSKVIADM
ASKFSISPENITQTGSYRSNLNLDVQGVSEADKLTTLIPWLQPRLGQAGIVYVTLQHSAE
KVAQALTRAGIVAQAYHAGMNSEDRISIQQRFMSGELSLIVATIAFGMGIDKSNIRFVVH
YDLPKSIENYAQEIGRAGRDGQSSDCLLLANVSNLNVLENFVYSDTPEASGIDFIFSEIK
KSGSQWEVLMNSLSDKSNIRLLALKTLLVYLELEGVLSPAYSYYAEYRYKLLVPEAQLLA
RFKDERLHFVKVILESSDKARTWATLNFEKLEQIDQSPRSRVITAIDYLAQQGLIELQTK
QMTLVYHILDKPINSELHDLLLRRFIEKEQSEIQRIHFLINFFASDRCLNLQLAQYFSDP
KLKGACLHCSVCAGNIARMPEVERLVPVNELNFYSLTQEIQEKLGVHHSATLIARFLCGL
STPIFRRIKARKIFAFAKLEKYRFAQVKQWVEMQLK
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgtataacaaattacaaaaatattttggttttgactcttttagagaaggtcaggaacca
gtgatcaaggcgttattaaacgcgcaaagtgcagccgctatttttccaaccggatcgggt
aaatcattatgttatcaacttccggcattgtgtcttcctcatttaaccttggtggtatct
cccttacttgcattgatccaagatcagcttgattttttacatcaaaaaggtatttcggct
gccagtattcaatcgatgcaaagtgcagcgcaatcagcggatgtttatcgacaagtttct
gaaggtaatattaagatcctgtttatttctgtggagcgtttaaacagtgagcgctttcgt
ttgtttttaaaaacaattcgtatttctttattagtggttgatgaagcgcattgtatttct
gagtggggccacaactttcgcccagattatttaaagctagcgcaatatcgtaaggaattt
aatattgcacaggttttgttattaaccgcaacagcgacctctaaagtgattgcggatatg
gcgagtaaattttcaatatcccctgaaaacattacccaaacaggatcttatcgtagcaat
ttaaacttagacgttcagggtgtatcggaagccgataaattaacaaccttgatcccatgg
ttacaaccgcgcttggggcaagcgggaattgtatatgtgacattacaacatagtgctgaa
aaggtagcccaagctttaacgcgggcaggtattgttgcacaggcatatcatgccggaatg
aacagcgaggatcgcatttcgatacagcagcgttttatgtcaggagagttatctttaatc
gtcgcaacgatagcgtttggtatgggcatagataaaagtaacatccgttttgttgtgcat
tatgatcttcctaaatcgattgaaaattacgctcaagaaattggccgtgcgggccgtgat
ggtcaaagtagtgattgtttgttattagcgaacgtcagtaatcttaatgtactggaaaac
tttgtttatagtgacacaccagaggcctctggcattgattttatcttttcagaaataaag
aaatctggatcgcagtgggaggtattaatgaatagtctgtcagataaatcgaatatccgc
ttgcttgcccttaaaacattactggtgtatttggaattagaaggggtgctaagccctgca
tatagttattacgcagagtatcgctataaactgttagtgccagaagcacagttactcgct
cgttttaaagatgaaagacttcattttgtaaaagtcatattagaaagctcagacaaagca
cggacttgggctacccttaattttgaaaaattagagcagatcgatcaaagcccgcgtagt
cgcgtgatcactgcgattgattatttggcacaacaaggcttaatagaattacaaacgaag
cagatgaccttggtttatcatattttagataaacctattaatagtgaattacatgacttg
ttattacgtcgttttattgaaaaagagcaaagtgagatccagcggatccattttttaatt
aacttttttgcaagtgatcgttgtttgaatttgcaattagcacaatatttttcagatcca
aagttaaagggggcatgtttgcattgtagcgtttgcgccgggaatatagcaaggatgcct
gaagtggagaggttagtccctgttaatgaattaaatttttattcattaacccaagagatc
caagaaaaattaggtgtacatcatagtgcaactttgatcgcgcgtttcttgtgtggttta
agcactcccatttttagacgtataaaggcgcgtaaaatctttgcgtttgcaaaattagag
aaatatcgttttgcacaagtaaaacaatgggtcgagatgcaactaaagtga
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