Psychroserpens sp. NJDZ02: E9099_00435
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Entry
E9099_00435 CDS
T05945
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psyn
Psychroserpens sp. NJDZ02
Pathway
psyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E9099_00435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psyn03019
]
E9099_00435
03009 Ribosome biogenesis [BR:
psyn03009
]
E9099_00435
Enzymes [BR:
psyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E9099_00435
Messenger RNA biogenesis [BR:
psyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E9099_00435
Ribosome biogenesis [BR:
psyn03009
]
Prokaryotic type
rRNA helicases
E9099_00435
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QCE39962
UniProt:
A0A4P7WTG8
LinkDB
All DBs
Position
86673..88559
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AA seq
628 aa
AA seq
DB search
MSTFQDLGLNEDLLKGINDLGFEKPSEVQAKAIPILLNEETDLVALAQTGTGKTAAFGFP
MLQKIDVNSRTTQGLILSPTRELCLQIANEMKAYGKYCKGLNVVAIYGGSSITDQAREVK
RGAQIIVATPGRMKDMINRRLVDITKIQYSVLDEADEMLNMGFKEDITDILSGTPDDKNT
WLFSATMPREVSTIAKKFMVNPQEITVGHKNESTSNVSHEYYMVNARDRYQALKRLADAN
PDIFSVIFCRTKRDTQKVAENLIEDGYSAGALHGDLSQNQRDIVMKQFRSRQIQMLVATD
VAARGIDVDDITHVINYQLSDEIETYTHRSGRTGRAGKTGVSMVIVSKSEVRRLKSIERI
INKKFELKEIPNGMAICEVQLMSLANKIHNTEINHEIDKYLGDINTLFEDTSKEELIKKF
FSVEFTRFFNYYQKSKNLNVAGGDSGRDSGREGRPQSSGSAARFFINVGEKDGYDWMKLK
DFLKEVLDLGRDDVFKVDVKETFSFFNTEKEHQEKVLAFFTDYKDNGRFVNVEVTEDRGG
SRGGGRDRNRGGGGGRRREGGSGGGRRRDDKPRGERRSSRRSDDSSGSRSDRRRSNEGNS
DSNGGRGDRDKSEFKTSHSRPTRSRRRD
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagcacattccaagatttaggtctaaacgaagatctattaaaaggtattaacgattta
ggttttgaaaaaccatcagaagtacaagcaaaagcaatcccaattttattaaacgaagaa
acagatttagtagcgttagcgcaaactggaactggtaaaactgcagcatttggttttcca
atgttacagaagattgacgtaaacagtcgtaccactcaaggtttaattttatctccaaca
cgtgaactttgtttacagattgcgaatgaaatgaaagcctacggtaaatactgtaaaggt
ttaaatgttgtcgctatatatggtggttcaagtattactgatcaagcaagagaagtaaaa
cgtggagcgcaaatcattgtagctacacctggtcgtatgaaagatatgatcaatcgtcgc
ttagtagacattactaaaatccaatattcggttttagatgaagctgatgagatgttaaac
atgggattcaaggaagacattacagacatattatctggtactcctgacgacaagaacaca
tggttattctctgctacaatgccaagagaagtttccactattgctaagaaatttatggtt
aatccacaagaaattactgtggggcataaaaatgaaagtacaagtaacgtctctcacgaa
tattacatggttaacgctcgtgatcgttaccaagctttaaaacgtttagcagatgcaaat
cctgatatattttcagttatattttgtagaacaaaacgtgatacgcaaaaagtagctgaa
aacttaatagaagacggttacagtgctggtgcattacatggtgatttatctcaaaatcaa
cgtgatattgtaatgaagcaatttagatctcgtcaaatccaaatgcttgttgcaacagat
gttgctgcacgtggtattgatgtagatgatattacacacgttattaattaccaattaagt
gacgagatagaaacttatacacaccgttctggtagaacaggtcgtgctggtaaaacaggt
gtatctatggtaattgtttctaaaagtgaagtacgtcgtttaaaaagtatcgagcgtatt
attaacaagaaatttgaattaaaagaaattcctaacggaatggctatttgcgaagtacaa
ttaatgtctttagcaaataaaatacataacacagaaatcaatcatgagattgataaatat
ttgggagatattaatactttatttgaagacacttcaaaagaagaacttattaaaaaattc
ttctctgtagagtttactcgtttctttaactattatcaaaaatctaaaaacttaaatgtt
gcaggtggagactctggtcgtgatagtggtcgtgaaggaagacctcaatcttctggaagc
gcagcacgtttctttattaatgttggagaaaaagatggttatgactggatgaaattaaaa
gatttcttgaaagaagttttagatttaggtcgtgatgatgtctttaaagtagatgttaaa
gaaacattctctttctttaatacagaaaaagaacaccaagaaaaagtcttagcattcttt
acagattacaaagacaatggacgttttgttaatgtagaagttacagaagacagaggcgga
agtcgtggtggtggtcgtgatagaaaccgtggtggcggtggtggaagacgtcgtgaaggt
ggaagtggtggcggaagacgtcgcgatgacaaaccaagaggagaaagacgttcttctaga
agaagtgatgacagttctggaagcagaagtgacagacgtagaagtaatgaaggtaactct
gacagcaatggaggacgtggagacagagataaatctgaatttaaaacctctcactcaaga
ccaacaagatctagacgtagagattaa
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