Stutzerimonas stutzeri ATCC 17588 = LMG 11199: PSTAB_0607
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Entry
PSTAB_0607 CDS
T01571
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
psz
Stutzerimonas stutzeri ATCC 17588 = LMG 11199
Pathway
psz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
psz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
PSTAB_0607 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psz03021
]
PSTAB_0607 (rpoD)
Transcription machinery [BR:
psz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PSTAB_0607 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AEJ03888
UniProt:
F8H962
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Position
complement(666634..668487)
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AA seq
617 aa
AA seq
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MSGKAQQQSRLKELIQRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFET
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMSAIAHFPGTVDSILADYERVTNEGGRLSDILSGYIDPDDDGAAAPQE
VEPETPQTTAKPVVDDKDDDDEEESDTEEEEGDGGPDPEVARVRFGAVAEQLEKANKALK
KHGRASQQATEELEALAILFMPIKLVPKQYDALVERVRDALNQIRAQERAIMQLCVRDAR
MPRADFLRQFPSNETNLDWAEQLAAGKSKYAEAIGNRKEEIQRCQQKLIELEQQCELAIA
DIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR
EPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSAMQSPIDVAT
VESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR
KLRHPTRSEHLRSFLDE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtcccgcctcaaagagttgatccagcgtggccgtgag
cagggttacctgacttacgccgaggttaacgaccacctgccggaggatatttccgatccg
gaacaggtggaagacatcattcgcatgatcaacgacatgggcatcaacgtattcgagacc
gctccggatgccgatgccctgttgttggccgaagccgataccgatgaagccgcagccgaa
gaggccgcagccgcactcgccgcggtcgagaccgatatcggccgcaccaccgacccagtg
cgcatgtacatgcgcgagatgggcaccgtcgaactgctgacccgcgaaggcgagatcgaa
atcgccaaacgcattgaggaaggcattcgcgaagtcatgagcgcgatcgcccacttccct
ggcaccgtcgacagcatcctcgccgactacgagcgcgtgacgaacgaaggcggtcgcctg
tccgacatcctcagcggctacatcgaccccgacgacgacggtgctgccgcaccgcaggaa
gtcgagccggaaacgccgcagaccacggccaagccggtagtcgacgacaaggacgacgac
gacgaagaagagtcggataccgaggaagaagaaggcgacggcgggcccgatccggaagtt
gcgcgcgtgcgcttcggcgcggtcgccgaacagcttgagaaagccaacaaggcccttaag
aagcacggccgcgccagccagcaggccaccgaggagctcgaagccctcgccatcctgttt
atgccgatcaagctcgtgcccaagcagtacgatgccctggtcgagcgcgtgcgtgatgct
ctgaaccagatccgtgctcaggaacgcgccatcatgcagttgtgcgtgcgtgatgcccgc
atgccgcgcgccgacttcctgcgtcagttcccgagcaacgagaccaatctcgactgggcc
gagcaactggctgcaggcaagagcaagtacgccgaagccatcggcaaccgcaaggaagag
attcagcgctgccagcagaagctcatcgaactggaacagcagtgcgaactcgccatcgcc
gacatcaaggacatcaatcgccgcatgtccattggtgaggccaaggcccgccgggcgaag
aaggagatggtcgaggccaacctgcgcctggtgatatccatcgccaagaagtacaccaac
cgcggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggcggtg
gacaagttcgaataccgccgcggctacaagttctcgacttacgccacctggtggattcgc
caggcgatcactcgctccattgccgaccaggcgcggaccatccgcatcccggtacacatg
atcgagacgatcaacaagctcaaccgcatctcccgtcagatgctgcaggaaatgggccgc
gagcccacgcccgaagagcttggcgagcgcatggaaatgcccgaggacaagatccgcaag
gtgctgaagatcgccaaggagccaatctccatggaaacgccgatcggtgacgacgaagac
tcgcacctgggcgatttcatcgaagattcggccatgcagtcgccgatcgacgtggccacc
gtggaaagcctcaaggaagccacccgcgaagtactgtccggcctcaccgcccgtgaagcc
aaggtactgcgcatgcgcttcggcatcgacatgaataccgaccacaccctcgaggaagtc
ggcaagcagttcgatgtcacccgcgagcgcattcgccagatcgaagccaaggcgctgcgc
aagctgcgccacccgacgagaagcgagcacctgcgctccttcctcgacgagtaa
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